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(-) Description

Title :  MODEL OF A FATTY ACID BINDING PROTEIN FROM ASCARIS SUUM, THEORETICAL MODEL
 
Authors :  J. Beauchamp, B. Mei, M. W. Kennedy, P. R. Komuniecki, R. Komuniecki
Date :  08 Jan 97  (Deposition) - 16 Jun 97  (Release) - 16 Jun 97  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Fatty Acid Binding, Fabp, Transporter Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Mei, M. W. Kennedy, J. Beauchamp, P. R. Komuniecki, R. Komuniecki
Secretion Of A Novel, Developmentally Regulated Fatty Acid-Binding Protein Into The Perivitelline Fluid Of The Parasitic Nematode, Ascaris Suum.
J. Biol. Chem. V. 272 9933 1997
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AS-P18
    Cell: EGG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30/AS-P18
    Expression System Strain: M15 (PREP4)
    Expression System Vector Type: PLASMID
    Organ: EGG
    Organism Common: PIG ROUNDWORM
    Organism Scientific: ASCARIS SUUM
    Other Details: PROTEIN AND MRNA ISOLATED FROM 5 DAY OLD ASCARIS SUUM EGGS
    Tissue: PERIVITELLINE FLUID

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AS1)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AS1)

(-) PROSITE Motifs  (1, 1)

Theoretical Model (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FABPPS00214 Cytosolic fatty-acid binding proteins signature.FABH_ASCSU29-46  1A:29-46

(-) Exons   (0, 0)

(no "Exon" information available for 1AS1)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with FABH_ASCSU | P55776 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:140
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163
           FABH_ASCSU    24 PDKFLGTFKLERDENFDEYLKARGYGWIMRQVIKLAGVTKKFRNAASGKPDRYDMENLTTKKDTHHKDWALGEEFQDEALDSTQHKITFDLKDPNTLTETHIKVDDPTDVETYEYRRDGDYLVMKMSWKGVSTSRYYKKQ 163
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .hhh.eeeeeeee..hhhhhhh.....hhhhhhhhhhh.....eeeeee..eeeeee................eeeee.....eeeeeeeee..---------hhheee..eeeeeee..eeeeeee....eeeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------eeeeeeeeee------------------------------------ Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----FABP  PDB: A:29-46--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1as1 A  24 PDKFLGTFKLERDENFDEYLKARGYGWIMRQVIKLAGVTKKFRNAASGKPDRYDMENLTTKKDTHHKDWALGEEFQDEALDSTQHKITFDLKDPNTLTETHIKVDDPTDVETYEYRRDGDYLVMKMSWKGVSTSRYYKKQ 163
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1AS1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1AS1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AS1)

(-) Gene Ontology  (3, 3)

Theoretical Model(hide GO term definitions)
Chain A   (FABH_ASCSU | P55776)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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