1AOZ - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   REFINED CRYSTAL STRUCTURE OF ASCORBATE OXIDASE AT 1.9 ANGSTROMS RESOLUTION

Authors :   A. Messerschmidt, R. Ladenstein, R. Huber

Date :   08 Jan 92 (Deposition) - 31 Oct 93 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Oxidoreductase(Oxygen Acceptor) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Messerschmidt, R. Ladenstein, R. Huber, M. Bolognesi, L. Avigliano, R. Petruzzelli, A. Rossi, A. Finazzi-Agro
Refined Crystal Structure Of Ascorbate Oxidase At 1. 9 A Resolution.
J. Mol. Biol. V. 224 179 1992
PubMed-ID: 1548698 | Reference-DOI: 10.1016/0022-2836(92)90583-6
(for further references see the PDB file header)

Molecule 1 - ASCORBATE OXIDASE
	Chains	:	A, B
	EC Number	:	1.10.3.3
	Engineered	:	YES
	Organism Common	:	ZUCCHINI
	Organism Scientific	:	CUCURBITA PEPO VAR. MELOPEPO
	Organism Taxid	:	3665
	Strain	:	VAR. MELOPEPO

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	C1O	2	Ligand/Ion	CU-O LINKAGE
2	C2O	2	Ligand/Ion	CU-O-CU LINKAGE
3	CU	3	Ligand/Ion	COPPER (II) ION
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	C1O	2	Ligand/Ion	CU-O LINKAGE
2	C2O	2	Ligand/Ion	CU-O-CU LINKAGE
3	CU	-1	Ligand/Ion	COPPER (II) ION
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	C1O	4	Ligand/Ion	CU-O LINKAGE
2	C2O	4	Ligand/Ion	CU-O-CU LINKAGE
3	CU	-1	Ligand/Ion	COPPER (II) ION
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:71 , ASN A:92 , PRO A:532 , HOH A:1200	BINDING SITE FOR RESIDUE NAG A 601
2	AC2	SOFTWARE	VAL B:45 , ASN B:92 , PRO B:532	BINDING SITE FOR RESIDUE NAG B 601
3	AC3	SOFTWARE	HIS A:445 , CYS A:507 , HIS A:512 , MET A:517	BINDING SITE FOR RESIDUE CU A 701
4	AC4	SOFTWARE	HIS B:445 , CYS B:507 , HIS B:512 , MET B:517	BINDING SITE FOR RESIDUE CU B 701
5	AC5	SOFTWARE	HIS A:286 , HIS B:286	BINDING SITE FOR RESIDUE CU A 812
6	AC6	SOFTWARE	HIS A:62 , HIS A:104 , HIS A:106 , HIS A:448 , HIS A:450 , HIS A:506 , HIS A:508 , C1O A:703 , HOH A:953	BINDING SITE FOR RESIDUE C2O A 702
7	AC7	SOFTWARE	HIS A:60 , HIS A:62 , GLY A:63 , HIS A:448 , HIS A:450 , C2O A:702 , HOH A:894 , HOH A:1026	BINDING SITE FOR RESIDUE C1O A 703
8	AC8	SOFTWARE	HIS B:62 , HIS B:104 , HIS B:106 , HIS B:448 , HIS B:450 , HIS B:506 , HIS B:508 , C1O B:703 , HOH B:870	BINDING SITE FOR RESIDUE C2O B 702
9	AC9	SOFTWARE	HIS B:60 , HIS B:62 , GLY B:63 , HIS B:448 , HIS B:450 , C2O B:702 , HOH B:811	BINDING SITE FOR RESIDUE C1O B 703

Asymmetric Unit

No.	Residues
1	A:19	-	A:201
2	A:81	-	A:538
3	A:180	-	A:193
4	B:19	-	B:201
5	B:81	-	B:538
6	B:180	-	B:193

Asymmetric Unit

No.	Residues
1	Phe A:31	-	Pro A:32
2	Lys A:159	-	Pro A:160
3	Leu A:299	-	Pro A:300
4	Phe B:31	-	Pro B:32
5	Lys B:159	-	Pro B:160
6	Leu B:299	-	Pro B:300

(no "SAP(SNP)/Variant" information available for 1AOZ)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	ASO_CUCPM	501-521	2	A:501-521 B:501-521
2	MULTICOPPER_OXIDASE2	PS00080	Multicopper oxidases signature 2.	ASO_CUCPM	506-517	2	A:506-517 B:506-517

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	ASO_CUCPM	501-521	2	A:501-521 B:501-521
2	MULTICOPPER_OXIDASE2	PS00080	Multicopper oxidases signature 2.	ASO_CUCPM	506-517	2	A:506-517 B:506-517

Biological Unit 2 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTICOPPER_OXIDASE1	PS00079	Multicopper oxidases signature 1.	ASO_CUCPM	501-521	4	A:501-521 B:501-521
2	MULTICOPPER_OXIDASE2	PS00080	Multicopper oxidases signature 2.	ASO_CUCPM	506-517	4	A:506-517 B:506-517

(no "Exon" information available for 1AOZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:552
 aligned with ASO_CUCPM | P37064 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:552
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550  
            ASO_CUCPM     1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLINNPKNP 552
               SCOP domains d1aoza1 A:1-129 Ascorbate oxidase                                                                                                d1aoza2 A:130-338 Ascorbate oxidase                                                                                                                                                                              d1aoza3 A:339-552 Ascorbate oxidase                                                                                                                                                                                    SCOP domains
               CATH domains 1aozA01 A:1-130 Cupredoxins -  blue copper proteins                                                                               1aozA02 A:131-336 Cupredoxins -  blue copper proteins                                                                                                                                                         1aozA03 A:337-552 Cupredoxins -  blue copper proteins                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee......eeeeee........eeee...eeeeeeee........eeee......hhhhh..............eeeeeee....eeeeeee....hhhhh.eeeeeee............eeeeeeeeee...hhhhhhhhh............eeee..........hhhhh..................eee....eeeeeeee.....eeeeee....eeeeee..eeeeeeee..eee....eeeeeee........eeeeeeee........eeeeeee....................hhhhhhhhhh................eeeeeeeeeeee..eeeeee..eee.....hhhhhhhh..............................eee...eee....eeeeeeee...........eeeee....eeeeeeee...hhhhhhhh......ee.eeee...eeeeeeee....eeeeeee.hhhhhhh..eeeeee.hhhh...hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_----------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1aoz A   1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLINNPKNP 552
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Chain B from PDB  Type:PROTEIN  Length:552
 aligned with ASO_CUCPM | P37064 from UniProtKB/Swiss-Prot  Length:552

    Alignment length:552
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550  
            ASO_CUCPM     1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLINNPKNP 552
               SCOP domains d1aozb1 B:1-129 Ascorbate oxidase                                                                                                d1aozb2 B:130-338 Ascorbate oxidase                                                                                                                                                                              d1aozb3 B:339-552 Ascorbate oxidase                                                                                                                                                                                    SCOP domains
               CATH domains 1aozB01 B:1-130 Cupredoxins -  blue copper proteins                                                                               1aozB02 B:131-336 Cupredoxins -  blue copper proteins                                                                                                                                                         1aozB03 B:337-552 Cupredoxins -  blue copper proteins                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee......eeeeee........eeee...eeeeeeee........eeee......hhhhh..............eeeeeee....eeeeeee...hhhhhh.eeeeeee............eeeeeeeeee...hhhhhhhhhhh..........eeee..........hhhhh..................eee....eeeeeeee.....eeeeee....eeeeee..eeeeeeee..eee....eeeeeee........eeeeeeee........eeeeeee....................hhhhhhhhhhhh..............eeeeeeeeeeee..eeeeee..eee.....hhhhhhhh..............................eee...eee....eeeeeee............eeeee....eeeeeeee...hhhhhhhh......ee.eeee...eeeeeeee....eeeeeee.hhhhhhh..eeeeee.hhhh...hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 ------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_----------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1aoz B   1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACGGTAKSLINNPKNP 552
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: Multidomain cupredoxins (146)

Protein domain: Ascorbate oxidase (4)

Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663] (4)

1a	d1aoza1	A:1-129
1b	d1aoza2	A:130-338
1c	d1aoza3	A:339-552
1d	d1aozb1	B:1-129
1e	d1aozb2	B:130-338
1f	d1aozb3	B:339-552

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Cupredoxins - blue copper proteins (420)

Melopepo (Cucurbita pepo var) (4)

1a	1aozA01	A:1-130
1b	1aozB01	B:1-130
1c	1aozA03	A:337-552
1d	1aozB03	B:337-552
1e	1aozA02	A:131-336
1f	1aozB02	B:131-336

(no "Pfam Domain" information available for 1AOZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ASO_CUCPM | P37064)

molecular function
	GO:0008447	L-ascorbate oxidase activity	Catalysis of the reaction: 2 L-ascorbate + O2 = 2 dehydroascorbate + 2 H2O.
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
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		Lys A:159 - Pro A:160	[ RasMol ]
		Lys B:159 - Pro B:160	[ RasMol ]
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		Phe B:31 - Pro B:32	[ RasMol ]

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	ASO_CUCPM \| P37064	:	1aso 1asp 1asq

(no "Related Entries Specified in the PDB File" available for 1AOZ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (6, 6)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

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SCOP Domains (1, 6)

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