1AOV - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   APO DUCK OVOTRANSFERRIN

Authors :   A. Rawas, H. Muirhead

Date :   11 Dec 96 (Deposition) - 16 Jun 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   4.00

Chains :   Asym./Biol. Unit : A

Keywords :   Transferrin, Iron Uptake, Protein Crystallography, Molecular Replacement (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Rawas, K. Moreton, H. Muirhead, J. Williams
Preliminary Crystallographic Studies On Duck Ovotransferrin.
J. Mol. Biol. V. 208 213 1989
PubMed-ID: 2769754 | Reference-DOI: 10.1016/0022-2836(89)90100-9
(for further references see the PDB file header)

Molecule 1 - APO-OVOTRANSFERRIN
	Cell	:	EGG
	Chains	:	A
	Organism Scientific	:	ANAS PLATYRHYNCHOS
	Organism Taxid	:	8839

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1AOV)

(no "Site" information available for 1AOV)

Asymmetric/Biological Unit

No.	Residues
1	A:20	-	A:36
2	A:115	-	A:197
3	A:228	-	A:242
4	A:348	-	A:380
5	A:405	-	A:680
6	A:454	-	A:530
7	A:478	-	A:671
8	A:488	-	A:502
9	A:499	-	A:513
10	A:570	-	A:584

Asymmetric/Biological Unit

No.	Residues
1	Ala A:70	-	Pro A:71

(no "SAP(SNP)/Variant" information available for 1AOV)

Asymmetric/Biological Unit (4, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSFERRIN_LIKE_4	PS51408	Transferrin-like domain profile.	TRFE_ANAPL	7-333 345-670	2	A:7-333 A:345-670
2	TRANSFERRIN_LIKE_1	PS00205	Transferrin-like domain signature 1.	TRFE_ANAPL	92-101 431-440	2	A:92-101 A:431-440
3	TRANSFERRIN_LIKE_2	PS00206	Transferrin-like domain signature 2.	TRFE_ANAPL	191-207 524-539	2	A:191-207 A:524-539
4	TRANSFERRIN_LIKE_3	PS00207	Transferrin-like domain signature 3.	TRFE_ANAPL	223-253	1	A:223-253

(no "Exon" information available for 1AOV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:686
 aligned with TRFE_ANAPL | P56410 from UniProtKB/Swiss-Prot  Length:686

    Alignment length:686
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680      
           TRFE_ANAPL     1 APPKTTVRWCTISSAEEKKCNSLKDHMQQERVTLSCVQKATYLDCIKAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYERSGGSTTSYYAVAVVKKGTDFMIKDLRGKTSCHTGLGRSAGWNIPIGTLIHREDIEWEGIESGISEQAVAKFFSASCVPGATIEQKLCRQCKGDAKTKCLRNGPYSGYSGAFQCLKDGKGDVAFVKHTTVQENAPEEKDEYELLCLDGSRQPVDSYKTCNWARVAAHAVVARDDSKIDDIWSFLGMQAYSLGVDTTSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAIQSLRKDQLTVGPRENKIQWCAVGKDEKSKCDRWSVVSNGEVECTILDDNKDCIVKITKGEADAISLDGGFVYTAGVCGLVPVVGESYEDETQCSKDEEQPAYYFAVAVVKKSSAITWNNLQGKKSCHTAVGRTAGWNIPMGLIHNKTGSCDFDDYFSEGCAPGSPPNSRLCKLCQGSGENLLEKCVASSHEKYYGYTGALRCLVEQGDVAFIKHSTVGENVSGSNKDDWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAKVPTHAVVARPEKANKIRELLEGQEKLFGLHGTEKERFMMFQSQTKDLLFKALTKCLVKLRQGITYKEFLGDEYYASVASLNTCNPSDLLQVCTFLEDK 686
               SCOP domains d1aova1 A:1-334 Ovotransferrin                                                                                                                                                                                                                                                                                                                d1aova2 A:335-686 Ovotransferrin                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1aovA01 A:1-91,A:251-339 Periplasmic binding protein-like II                               1aovA02 A:92-250 Periplasmic binding protein-like II                                                                                                           1aovA01 A:1-91,A:251-339 Periplasmic binding protein-like II                             1aovA03 A:340-433,A:590-686 Periplasmic binding protein-like II                               1aovA04 A:434-589 Periplasmic binding protein-like II                                                                                                       1aovA03 A:340-433,A:590-686 Periplasmic binding protein-like II                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh......eee.hhhhhhhh.....eeeeeeee............eeeeee......hhhh...eee..........hhhhhhhhhh.............hhhhhhh..eee........hhhh.................hhhhhhhhhh......eeee.hhhhhhh...hhheeeee...eeeehhhhhh.........eeeee....hhhhhhhhhhhhhh................................eeee......hhhh.hhhhhhhhhhhh............eeeeee.hhhhhhhhhhhhhh...eeeeee..hhhhhhhhh.....eeee.hhhhhhhhh..eee.eeee...................eeee.......hhh....eeee.........hhhhhhhhhhh..........eeee.......hhh.......................hhhhhhhhhhh...eeee....hhhh.......hhh....hhh.eee.....eee...............eeeeehhhhhhhhhhhhhhhhhh...........................eeee......hhhhhhhhhhhhhhhhhhh...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------TRANSFERRIN_LIKE_4  PDB: A:7-333 UniProt: 7-333                                                                                                                                                                                                                                                                                        -----------TRANSFERRIN_LIKE_4  PDB: A:345-670 UniProt: 345-670                                                                                                                                                                                                                                                                                   ---------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------TRANSFERRI-----------------------------------------------------------------------------------------TRANSFERRIN_LIKE_---------------TRANSFERRIN_LIKE_3             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSFERRI-----------------------------------------------------------------------------------TRANSFERRIN_LIKE--------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1aov A   1 APPKTTVRWCTISSAEEKKCNSLKDHMQQERVTLSCVQKATYLDCIKAISNNEADAISLDGGQVFEAGLAPYKLKPIAAEVYERSGGSTTSYYAVAVVKKGTDFMIKDLRGKTSCHTGLGRSAGWNIPIGTLIHREDIEWEGIESGISEQAVAKFFSASCVPGATIEQKLCRQCKGDAKTKCLRNGPYSGYSGAFQCLKDGKGDVAFVKHTTVQENAPEEKDEYELLCLDGSRQPVDSYKTCNWARVAAHAVVARDDSKIDDIWSFLGMQAYSLGVDTTSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPELMDSQLYLGFEYYSAIQSLRKDQLTVGPRENKIQWCAVGKDEKSKCDRWSVVSNGEVECTILDDNKDCIVKITKGEADAISLDGGFVYTAGVCGLVPVVGESYEDETQCSKDEEQPAYYFAVAVVKKSSAITWNNLQGKKSCHTAVGRTAGWNIPMGLIHNKTGSCDFDDYFSEGCAPGSPPNSRLCKLCQGSGENLLEKCVASSHEKYYGYTGALRCLVEQGDVAFIKHSTVGENVSGSNKDDWAKGLTRDDFELLCTNGKRAKTMDYKTCHLAKVPTHAVVARPEKANKIRELLEGQEKLFGLHGTEKERFMMFQSQTKDLLFKALTKCLVKLRQGITYKEFLGDEYYASVASLNTCNPSDLLQVCTFLEDK 686
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Transferrin (82)

Protein domain: Ovotransferrin (14)

Duck (Anas platyrhynchos) [TaxId: 8839] (5)

1a	d1aova1	A:1-334
1b	d1aova2	A:335-686

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: Periplasmic binding protein-like II (486)

Anas platyrhynchos. Organism_taxid: 8839. (2)

1a	1aovA02	A:92-250
1b	1aovA04	A:434-589
1c	1aovA01	A:1-91,A:251-339
1d	1aovA03	A:340-433,A:590-686

(no "Pfam Domain" information available for 1AOV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (TRFE_ANAPL | P56410)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055072	iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1aov)

	Sites
(no "Sites" information available for 1aov)

	Cis Peptide Bonds
		Ala A:70 - Pro A:71	[ RasMol ]

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	1aov
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	TRFE_ANAPL \| P56410	:	1dot 1gv8 1gvc 1ovb

(no "Related Entries Specified in the PDB File" available for 1AOV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (10, 10)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 7)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (1, 4)

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Gene Ontology (6, 6)

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