Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL BASIS OF GALACTOSE RECOGNITION IN C-TYPE ANIMAL LECTINS
 
Authors :  A. R. Kolatkar, W. I. Weis
Date :  03 Nov 95  (Deposition) - 03 Apr 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  1,2,3
Keywords :  C-Type Lectin, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Kolatkar, W. I. Weis
Structural Basis Of Galactose Recognition By C-Type Animal Lectins.
J. Biol. Chem. V. 271 6679 1996
PubMed-ID: 8636086  |  Reference-DOI: 10.1074/JBC.271.12.6679
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MANNOSE-BINDING PROTEIN-A
    Chains: 1, 2, 3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PINIIIOMPA2
    Expression System Taxid: 562
    Fragment: CLOSTRIPAIN FRAGMENT (RESIDUES 73 - 226)
    Mutation: YES
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Other Details: PH 8.0, DATA COLLECTED AT 100K, 20% 2- METHYL,2-4 PENTANEDIOL (CRYOPROTECTANT)
    Other Details - Source: THE BACTERIALLY EXPRESSED MATERIAL IS DIGESTED WITH CLOSTRIPAIN TO PRODUCE THE PROTEIN USED IN THE CRYSTAL STRUCTURE ANALYSIS
    Synonym: CL-QPDWG

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : 123

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
0111UNKNOWNASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:1 , HOH 1:237NULL
0211_01UNKNOWNASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , CA 1:1 , HOH 1:237NULL
0312UNKNOWNASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1 , HOH 2:245NULL
0412_02UNKNOWNASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:198 , ASP 2:199 , CA 2:1 , HOH 2:245NULL
0513UNKNOWNASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , CA 3:1 , HOH 3:231NULL
0613_03UNKNOWNASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , CA 3:1 , HOH 3:231NULL
0721UNKNOWNGLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , CA 1:2 , HOH 1:355NULL
0822UNKNOWNGLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211 , CA 2:2NULL
0923UNKNOWNGLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211 , CA 3:2 , HOH 3:323NULL
1031UNKNOWNGLU 1:84 , CA 1:3 , HOH 1:288 , HOH 1:350NULL
1133UNKNOWNGLU 3:84 , CA 3:3 , HOH 1:248 , HOH 3:257 , HOH 3:266NULL
12AC1SOFTWAREASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:198 , ASP 1:199 , HOH 1:237BINDING SITE FOR RESIDUE CA 1 1
13AC2SOFTWAREGLN 1:185 , ASP 1:187 , GLU 1:198 , ASN 1:210 , ASP 1:211 , HOH 1:355BINDING SITE FOR RESIDUE CA 1 2
14AC6SOFTWAREGLN 2:185 , ASP 2:187 , GLU 2:198 , ASN 2:210 , ASP 2:211BINDING SITE FOR RESIDUE CA 2 2
15AC7SOFTWAREASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:198 , ASP 3:199 , HOH 3:231BINDING SITE FOR RESIDUE CA 3 1
16AC8SOFTWAREGLN 3:185 , ASP 3:187 , GLU 3:198 , ASN 3:210 , ASP 3:211BINDING SITE FOR RESIDUE CA 3 2
17AC9SOFTWAREHOH 1:248 , GLU 3:84 , GLU 3:165 , ASP 3:199 , HOH 3:257 , HOH 3:266BINDING SITE FOR RESIDUE CA 3 3
18BC1SOFTWAREASP 3:199 , SER 3:213 , CYS 3:214 , HOH 3:252 , HOH 3:269BINDING SITE FOR RESIDUE CL 3 4

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
11:128 -1:222
21:200 -1:214
32:128 -2:222
42:200 -2:214
53:128 -3:222
63:200 -3:214

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gln 1:185 -Pro 1:186
2Gln 2:185 -Pro 2:186
3Gln 3:185 -Pro 3:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AFD)

(-) PROSITE Motifs  (2, 6)

Asymmetric/Biological Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.MBL1_RAT123-235
 
 		  31:106-223
2:106-223
3:106-223
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.MBL1_RAT212-234
 
 		  31:200-222
2:200-222
3:200-222

(-) Exons   (3, 9)

Asymmetric/Biological Unit (3, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000157231ENSRNOE00000411163chr16:17591820-1759188162MBL1_RAT-00--
1.2ENSRNOT000000157232ENSRNOE00000110617chr16:17593783-17593943161MBL1_RAT1-51510--
1.3ENSRNOT000000157233ENSRNOE00000110943chr16:17594301-17594417117MBL1_RAT51-904031:73-73
2:73-73
3:73-73		1
1
1
1.4ENSRNOT000000157234ENSRNOE00000111237chr16:17596168-1759624275MBL1_RAT90-1152631:73-98
2:73-98
3:73-98		26
26
26
1.5ENSRNOT000000157235ENSRNOE00000111555chr16:17597083-17597859777MBL1_RAT115-23812431:98-226
2:98-226
3:98-226		129
129
129

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:154
 aligned with MBL1_RAT | P19999 from UniProtKB/Swiss-Prot  Length:238

    Alignment length:154
                                                                                                                                                    207                               
                                                                                                                                             205 206  |                               
                                    99       109       119       129       139       149       159       169       179       189       199     | 206  |    214       224       234    
             MBL1_RAT    90 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPND---H--GSGEDCVTIVDNGLWNDISCQASHTAVCEFPA 238
               SCOP domains d1afd12 1:73-104                d1afd11 1:105-226 Mannose-binding protein A, C-lectin domain                                                               SCOP domains
               CATH domains 1afd100 1:73-226 Mannose-Binding Protein A, subunit A                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee......hhhhhhhhhhh.........hhhhhhhhhhh................................................eeee.....eeee........eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------C_TYPE_LECTIN_2  PDB: 1:106-223 UniProt: 123-235                                                                      --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1        ---- PROSITE (2)
           Transcript 1 (1) 1------------------------Exon 1.5  PDB: 1:98-226 UniProt: 115-238                                                                                          Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: 1:73-98    -------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1afd 1  73 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNGLWNDISCQASHTAVCEFPA 226
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    


Chain 2 from PDB  Type:PROTEIN  Length:154
 aligned with MBL1_RAT | P19999 from UniProtKB/Swiss-Prot  Length:238

    Alignment length:154
                                                                                                                                                    207                               
                                                                                                                                             205 206  |                               
                                    99       109       119       129       139       149       159       169       179       189       199     | 206  |    214       224       234    
             MBL1_RAT    90 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPND---H--GSGEDCVTIVDNGLWNDISCQASHTAVCEFPA 238
               SCOP domains d1afd22 2:73-104                d1afd21 2:105-226 Mannose-binding protein A, C-lectin domain                                                               SCOP domains
               CATH domains 1afd200 2:73-226 Mannose-Binding Protein A, subunit A                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee...eeehhhhhhhhhhh.........hhhhhhhhhhh................................................eeee.....eeee....eee.eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------C_TYPE_LECTIN_2  PDB: 2:106-223 UniProt: 123-235                                                                      --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1        ---- PROSITE (2)
           Transcript 1 (1) 1------------------------Exon 1.5  PDB: 2:98-226 UniProt: 115-238                                                                                          Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: 2:73-98    -------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1afd 2  73 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNGLWNDISCQASHTAVCEFPA 226
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    


Chain 3 from PDB  Type:PROTEIN  Length:154
 aligned with MBL1_RAT | P19999 from UniProtKB/Swiss-Prot  Length:238

    Alignment length:154
                                                                                                                                                    207                               
                                                                                                                                             205 206  |                               
                                    99       109       119       129       139       149       159       169       179       189       199     | 206  |    214       224       234    
             MBL1_RAT    90 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPND---H--GSGEDCVTIVDNGLWNDISCQASHTAVCEFPA 238
               SCOP domains d1afd32 3:73-104                d1afd31 3:105-226 Mannose-binding protein A, C-lectin domain                                                               SCOP domains
               CATH domains 1afd300 3:73-226 Mannose-Binding Protein A, subunit A                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee...eeehhhhhhhhhhh.........hhhhhhhhhhh................................................eeee.....eeee....eee.eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------C_TYPE_LECTIN_2  PDB: 3:106-223 UniProt: 123-235                                                                      --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1        ---- PROSITE (2)
           Transcript 1 (1) 1------------------------Exon 1.5  PDB: 3:98-226 UniProt: 115-238                                                                                          Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: 3:73-98    -------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1afd 3  73 AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAKTSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDQPDDWYGHGLGGGEDCVTIVDNGLWNDISCQASHTAVCEFPA 226
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AFD)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)
Chain 1,2,3   (MBL1_RAT | P19999)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0070273    phosphatidylinositol-4-phosphate binding    Interacting selectively and non-covalently with phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position.
    GO:0030247    polysaccharide binding    Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
    GO:0002020    protease binding    Interacting selectively and non-covalently with any protease or peptidase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0001867    complement activation, lectin pathway    Any process involved in the activation of any of the steps of the lectin pathway of the complement cascade which allows for the direct killing of microbes and the regulation of other immune processes.
    GO:0050830    defense response to Gram-positive bacterium    Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0051873    killing by host of symbiont cells    Any process mediated by an organism that results in the death of cells in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
    GO:0044130    negative regulation of growth of symbiont in host    Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.
    GO:0050766    positive regulation of phagocytosis    Any process that activates or increases the frequency, rate or extent of phagocytosis.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0070207    protein homotrimerization    The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    11  [ RasMol ]  +environment [ RasMol ]
    11_01  [ RasMol ]  +environment [ RasMol ]
    12  [ RasMol ]  +environment [ RasMol ]
    12_02  [ RasMol ]  +environment [ RasMol ]
    13  [ RasMol ]  +environment [ RasMol ]
    13_03  [ RasMol ]  +environment [ RasMol ]
    21  [ RasMol ]  +environment [ RasMol ]
    22  [ RasMol ]  +environment [ RasMol ]
    23  [ RasMol ]  +environment [ RasMol ]
    31  [ RasMol ]  +environment [ RasMol ]
    33  [ RasMol ]  +environment [ RasMol ]
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln 1:185 - Pro 1:186   [ RasMol ]  
    Gln 2:185 - Pro 2:186   [ RasMol ]  
    Gln 3:185 - Pro 3:186   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1afd
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  MBL1_RAT | P19999
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  MBL1_RAT | P19999
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MBL1_RAT | P19999: 1afa 1afb 1bch 1bcj 1buu 1fif 1fih 1kmb 1kwt 1kwu 1kwv 1kww 1kwx 1kwy 1kwz 1kx0 1kx1 1msb 1rtm 1ytt 2kmb 2msb 3kmb 4kmb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1AFD)