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(-) Description

Title :  MODELING THE ANTI-CEA ANTIBODY COMBINING SITE BY HOMOLOGY AND CONFORMATIONAL SEARCH
 
Authors :  M. T. Mas, K. C. Smith, D. L. Yarmush, K. Aisaka, R. M. Fine
Date :  06 Apr 92  (Deposition) - 31 May 94  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  H,L
Keywords :  Immunoglobulin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Mas, K. C. Smith, D. L. Yarmush, K. Aisaka, R. M. Fine
Modeling The Anti-Cea Antibody Combining Site By Homology And Conformational Search.
Proteins V. 14 483 1992
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTI-CEA FV (LIGHT CHAIN)
    Chains: L
    Engineered: YES
 
Molecule 2 - ANTI-CEA FV (HEAVY CHAIN)
    Chains: H
    Engineered: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AAG)

(-) Sites  (6, 6)

Theoretical Model (6, 6)
No.NameEvidenceResiduesDescription
1SH1not definedGLY H:26 , PHE H:27 , THR H:28 , PHE H:29 , SER H:30 , ARG H:31 , TYR H:32
2SH2not definedSER H:52A , GLY H:53 , GLY H:54 , SER H:55
3SH3not definedPRO H:95 , PRO H:96 , LEU H:97 , ILE H:98 , SER H:99 , LEU H:100 , ASP H:101
4SL1not definedSER L:26 , GLN L:27 , ASP L:28 , VAL L:29 , GLY L:30 , ALA L:31 , ALA L:32
5SL2not definedTRP L:50 , ALA L:51 , SER L:52 , THR L:52A , ARG L:54 , HIS L:55 , THR L:56
6SL3not definedTYR L:91 , SER L:92 , GLY L:93 , TYR L:94 , PRO L:95 , LEU L:96

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AAG)

(-) Cis Peptide Bonds  (2, 2)

Theoretical Model
No.Residues
1Ser L:7 -Pro L:8
2Tyr L:94 -Pro L:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AAG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AAG)

(-) Exons   (0, 0)

(no "Exon" information available for 1AAG)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain H from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......ee.........eeeee....eeeeee...hhhhheeeeeee.............ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                1aag H    1 EVMLVESGGGLVQPGGSLRLSCAASGFTFSRYAMSWVRQPPGKRLEWVATISSGGSHTFHPDSVKGRFIISRDNAKNTLYLQMNALRAEDTAIYYCARPPLISLVADYAMDYWGAGTTVTVSS  113
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100K       110   
                                                                              52A                            82A||               100A|||||             
                                                                                                              82B|                100B||||             
                                                                                                               82C                 100C|||             
                                                                                                                                    100I||             
                                                                                                                                     100J|             
                                                                                                                                      100K             


Chain L from PDB  Type:PROTEIN  Length:103
                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...........eeeeeee.......eeeeee.....eeeeee............eeeeee..eeeeee.........eeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                1aag L    1 DIVMTQSPSSLSVSAGERVTMSCKASQDVGAAIAWYQQKPGQPPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQQYSGYPLTFGAGTK  103
                                    10        20        30        40        50  ||    60        70        80        90       100   
                                                                              52A|                                                 
                                                                                54
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1AAG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1AAG)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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  1aag
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