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(-) Description

Title :  FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) R96L DELETION MUTANT ON VARIANT FOR CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL
 
Authors :  C. Marks, K. Henrick, G. Winter
Date :  16 Mar 98  (Deposition) - 29 Apr 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immunoglobulin, Variant, Deletion Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Marks, K. Henrick, G. Winter
X-Ray Structures Of D1. 3 Fv Mutants
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IGG1-KAPPA D1.3 FV (LIGHT CHAIN)
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FV FRAGMENT
    Mutation: YES
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Variant: CHAIN L, E81D, CHAIN H, L312V
 
Molecule 2 - IGG1-KAPPA D1.3 FV (HEAVY CHAIN)
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FV FRAGMENT
    Mutation: YES
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Variant: CHAIN L, E81D, CHAIN H, L312V

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1A7O)

(-) Sites  (0, 0)

(no "Site" information available for 1A7O)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1H:222 -H:295
2L:23 -L:88

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser L:7 -Pro L:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A7O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1A7O)

(-) Exons   (0, 0)

(no "Exon" information available for 1A7O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:116
 aligned with HVM44_MOUSE | P01820 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:116
                                                                                                                         115                    
                                    29        39        49        59        69        79        89        99       109     |   -         -      
          HVM44_MOUSE    20 QVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCA--------------------   -
               SCOP domains d1a7oh_ H: Immunoglobulin heavy chain variable domain, VH                                                            SCOP domains
               CATH domains 1a7oH00 H:201-316 Immunoglobulins                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..........eeeeeeee.......eeeeeee.....eeeeeee.....eee.......eeeeee....eeeeee....hhh.eeeeeeee....eeee...eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1a7o H 201 QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTVTVSS 316
                                   210       220       230       240       250       260       270       280       290       300       310      


Chain L from PDB  Type:PROTEIN  Length:106
 aligned with KV5A3_MOUSE | P01635 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:106
                                                                                                                        115           
                                    30        40        50        60        70        80        90       100       110    |    -      
          KV5A3_MOUSE    21 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTP-----------   -
               SCOP domains d1a7ol_ L: Immunoglobulin light chain kappa variable domain, VL-kappa                                      SCOP domains
               CATH domains 1a7oL00 L:1-107 Immunoglobulins                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeee.............eeeeee..eeeeee....hhh.eeeeeee..........eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 1a7o L   1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPDDFGSYYCQHFWSTPTFGGGTKLEIK 107
                                    10        20        30        40        50        60        70        80        90    || 101      
                                                                                                                         95|          
                                                                                                                          97
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A7O)

(-) Gene Ontology  (1, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain H   (HVM44_MOUSE | P01820)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

Chain L   (KV5A3_MOUSE | P01635)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

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  Cis Peptide Bonds
    Ser L:7 - Pro L:8   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HVM44_MOUSE | P01820: 1a2y 1a7n 1a7p 1a7q 1a7r 1dl7 1dvf 1g7h 1g7i 1g7j 1g7l 1g7m 1kir 1p4b 1p4i 1vfa 1vfb 43c9 43ca
        KV5A3_MOUSE | P01635: 1a2y 1a7n 1a7p 1a7q 1a7r 1dvf 1kip 1kiq 1qbl 1qbm 1vfa 1vfb 1wej

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1A7O)