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(-) Description

Title :  SUCROSE-SPECIFIC PORIN, WITH BOUND SUCROSE MOLECULES
 
Authors :  K. Diederichs, W. Welte
Date :  08 Dec 97  (Deposition) - 18 Mar 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  P,Q,R
Keywords :  Outer Membrane Protein, Porin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Forst, W. Welte, T. Wacker, K. Diederichs
Structure Of The Sucrose-Specific Porin Scry From Salmonella Typhimurium And Its Complex With Sucrose.
Nat. Struct. Biol. V. 5 37 1998
PubMed-ID: 9437428  |  Reference-DOI: 10.1038/NSB0198-37
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUCROSE-SPECIFIC PORIN
    Cellular Location: OUTER MEMBRANE
    Chains: P, Q, R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: OUTER MEMBRANE
    Expression System Plasmid: PSO112
    Expression System Strain: K-12
    Expression System Taxid: 562
    Expression System Variant: KS 26
    Expression System Vector Type: BACTERIAL
    Gene: SCRY
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 602

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : PQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2SUC6Ligand/IonSUCROSE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESUC P:2 , TYR P:78 , ARG P:80 , ARG P:110 , TYR P:118 , GLU P:120 , ARG P:161 , PHE P:188 , ASP P:199 , ASP P:201 , PHE P:204BINDING SITE FOR RESIDUE SUC P 1
2AC2SOFTWARESUC P:1 , GLY P:77 , ASP P:194 , HIS P:196 , TRP P:482 , HOH P:514BINDING SITE FOR RESIDUE SUC P 2
3AC3SOFTWARESUC Q:2 , TYR R:78 , ARG R:80 , ARG R:110 , TYR R:118 , GLU R:120 , ARG R:161 , PHE R:188 , ASP R:199 , ASP R:201 , PHE R:204BINDING SITE FOR RESIDUE SUC Q 1
4AC4SOFTWARESUC Q:1 , GLY R:77 , ASP R:194 , HIS R:196 , PHE R:435 , TRP R:482 , HOH R:516BINDING SITE FOR RESIDUE SUC Q 2
5AC5SOFTWARETYR Q:78 , ARG Q:80 , ARG Q:110 , TYR Q:118 , GLU Q:120 , ARG Q:161 , PHE Q:188 , ASP Q:199 , ASP Q:201 , PHE Q:204 , SUC R:2BINDING SITE FOR RESIDUE SUC R 1
6AC6SOFTWAREGLY Q:77 , ASP Q:194 , HIS Q:196 , PHE Q:435 , TRP Q:482 , HOH Q:520 , SUC R:1BINDING SITE FOR RESIDUE SUC R 2
7AC7SOFTWAREASN P:454 , ALA P:457 , ASP P:460 , LEU P:462BINDING SITE FOR RESIDUE CA P 10
8AC8SOFTWAREASN R:454 , ALA R:457 , ASP R:460 , LEU R:462BINDING SITE FOR RESIDUE CA Q 10
9AC9SOFTWAREASN Q:454 , ALA Q:457 , ASP Q:460 , LEU Q:462BINDING SITE FOR RESIDUE CA R 10

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1A0T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1A0T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A0T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1A0T)

(-) Exons   (0, 0)

(no "Exon" information available for 1A0T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain P from PDB  Type:PROTEIN  Length:413
 aligned with SCRY_SALTM | P22340 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:413
                                   102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502   
           SCRY_SALTM    93 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 505
               SCOP domains d1a0tp_ P: Sucrose-specific porin                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1a0tP00 P:71-483  [code=2.40.170.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..eeeeeeeeee.................hhhhh............eeeeeeeeeeee.....eeeeeeeeeeee.......hhh...eeeeeeeeee......hhh...eeeeeeee....eeehhh.eeee..eeeeeeee.eee...eeeeeeeeeeeee....hhheeeeeeeeeeeee..eeeeeeeee...hhh...............eeeeeeeeeee.........----------hhh................eeeeeeeeee......eeeeeeeeeeeee.......eeeeeeeeeeeeee....eeeeeeeeeeeeeee...hhh...eeeeeeeeeeeeeee...........eeeeeeeeeee.hhhhh................eeeeeeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0t P  71 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 483
                                    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   


Chain Q from PDB  Type:PROTEIN  Length:413
 aligned with SCRY_SALTM | P22340 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:413
                                   102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502   
           SCRY_SALTM    93 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 505
               SCOP domains d1a0tq_ Q: Sucrose-specific porin                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1a0tQ00 Q:71-483  [code=2.40.170.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..eeeeeeeeee.................hhhhh............eeeeeeeeeeee.....eeeeeeeeeeee.......hhh...eeeeeeeeee......hhh...eeeeeeee....eeehhh.eeee..eeeeeeee.eee...eeeeeeeeeeeee....hhheeeeeeeeeeeee..eeeeeeeee...hhh...............eeeeeeeeeee.........----------hhhh...............eeeeeeeeee......eeeeeeeeeeeee.......eeeeeeeeeeeeee....eeeeeeeeeeeeeee...hhh...eeeeeeeeeeeeeee...........eeeeeeeeeee.hhhhh................eeeeeeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0t Q  71 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 483
                                    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   


Chain R from PDB  Type:PROTEIN  Length:413
 aligned with SCRY_SALTM | P22340 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:413
                                   102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502   
           SCRY_SALTM    93 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 505
               SCOP domains d1a0tr_ R: Sucrose-specific porin                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1a0tR00 R:71-483  [code=2.40.170.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..eeeeeeeeee.................hhhhh............eeeeeeeeeeee.....eeeeeeeeeeee.......hhh...eeeeeeeeee......hhh...eeeeeeee....eeehhh.eeee..eeeeeeee.eee...eeeeeeeeeeeee....hhheeeeeeeeeeeee..eeeeeeeeee..hhh...............eeeeeeeeeee.........----------hhhh...............eeeeeeeeee......eeeeeeeeeeeee.......eeeeeeeeeeeeee....eeeeeeeeeeeeeee...hhh...eeeeeeeeeeeeeee...........eeeeeeeeeee.hhhhh................eeeeeeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0t R  71 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF 483
                                    80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A0T)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain P,Q,R   (SCRY_SALTM | P22340)
molecular function
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0008643    carbohydrate transport    The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCRY_SALTM | P22340: 1a0s 1oh2

(-) Related Entries Specified in the PDB File

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