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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HYPTHETICAL MYCOPLASMA PROTEIN, MPN555
 
Authors :  U. Schulze-Gahmen, S. Aono, C. Shengfeng, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date :  08 Jun 05  (Deposition) - 26 Jul 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  C (2x),D (2x)
Biol. Unit 6:  A,B  (2x)
Biol. Unit 7:  C (1x),D (1x)
Biol. Unit 8:  A (1x),B (1x)
Biol. Unit 9:  B  (2x)
Biol. Unit 10:  D  (2x)
Keywords :  Mostly Alpha Helical Protein, Tri-Lobal Structure, Structural Genomics, Psi, Protein Structure Initiative, Berkeley Structural Genomics Center, Bsgc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Schulze-Gahmen, S. Aono, S. Chen, H. Yokota, R. Kim, S. H. Kim
Structure Of The Hypothetical Mycoplasma Protein Mpn555 Suggests A Chaperone Function.
Acta Crystallogr. , Sect. D V. 61 1343 2005
PubMed-ID: 16204885  |  Reference-DOI: 10.1107/S090744490502264X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MG377 HOMOLOG
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSKB3
    Expression System Strain: BL21(DE3)PSJS1244
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOPLASMA PNEUMONIAE
    Organism Taxid: 2104
    Synonym: MPN555

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (2x):   C (2x)D (2x)
Biological Unit 6 (2x): AB  
Biological Unit 7 (1x):   C (1x)D (1x)
Biological Unit 8 (1x): A (1x)B (1x)  
Biological Unit 9 (2x):  B  
Biological Unit 10 (2x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZXJ)

(-) Sites  (0, 0)

(no "Site" information available for 1ZXJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZXJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZXJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZXJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZXJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZXJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Y555_MYCPN | P75223 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:198
                                    1                                                                                                                                                                                             
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
           Y555_MYCPN     - --------MATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQ 190
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........-....eeee.........eee.....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhh-----.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zxj A  11 DYDIFQGHMA-NLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRD-----EDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQ 215
                               ||   27 |      37        47        57        67        77        87        97       107       117   |   127       137       147       157       167       177       187       197       207        
                              14|   27 |                                                                                         121   127                                                                                        
                               22     29                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:171
 aligned with Y555_MYCPN | P75223 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:183
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184   
           Y555_MYCPN     5 LKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNL 187
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.........eee.....hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhheeee.hhhhhhhhh...---------..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.---..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxj B  30 LKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGL---------DNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYE---QSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNL 212
                                    39        49        59        69        79        89        99       109        |-       129       139       149       159       169|   |  179       189       199       209   
                                                                                                                  118       128                                       170 174                                      


Chain C from PDB  Type:PROTEIN  Length:192
 aligned with Y555_MYCPN | P75223 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:196
                                  1                                                                                                                                                                                             
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      
           Y555_MYCPN     - ------MATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQ 190
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.........eee.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhh..----.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zxj C  10 HDYDIFQGHMLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDV----EDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQ 215
                                ||  26|       39        49        59        69        79        89        99       109       119  |    129       139       149       159       169       179       189       199       209      
                               14|  26|                                                                                         122  127                                                                                        
                                22   30                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:193
 aligned with Y555_MYCPN | P75223 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:204
                                        1                                                                                                                                                                                               
                                     -  |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           Y555_MYCPN     - ------------MATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQLP 192
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------------------------------------------------Trigger_C-1zxjD01 D:77-204                                                                                                      ------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------Trigger_C-1zxjD02 D:77-204                                                                                                      ------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------Trigger_C-1zxjD03 D:77-204                                                                                                      ------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------Trigger_C-1zxjD04 D:77-204                                                                                                      ------------- Pfam domains (4)
         Sec.struct. author ...................eeee.........eee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhh..------....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zxj D  14 IPTTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGL------GAEDNTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYY-----SVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLTGQLP 217
                                    23        33        43        53        63        73        83        93       103       113    |    - |     133       143       153       163     |   - |     183       193       203       213    
                                                                                                                                  118    125                                         169   175
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZXJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZXJ)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Trigger_C (7)

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