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(-) Description

Title :  CRYSTAL STRUCTURE OF THE YERSINIA TYPE III SECRETION PROTEIN YSCE
 
Authors :  J. Phan, B. P. Austin, D. S. Waugh
Date :  03 Jun 05  (Deposition) - 23 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  A (2x),B (2x),C (2x),D (2x),E (2x),F (2x),G (2x),H (2x)
Biol. Unit 6:  A (2x),B (2x),C (2x),D (2x),E (2x),F (2x),G (2x),H (2x)
Biol. Unit 7:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 8:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 9:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 10:  A (1x),B (1x),C (1x),D (1x),G (1x),H (1x)
Biol. Unit 11:  A (1x),B (1x),C (1x),D (1x),G (1x),H (1x)
Biol. Unit 12:  A (1x),B (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 13:  A (1x),B (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 14:  A (1x),B (1x),G (1x),H (1x)
Biol. Unit 15:  C (1x),D (1x),E (1x),F (1x)
Keywords :  Type Iii Secretion, Chaperone, Yersinia, Translocation, Export (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Phan, B. P. Austin, D. S. Waugh
Crystal Structure Of The Yersinia Type Iii Secretion Protein Ysce
Protein Sci. V. 14 2759 2005
PubMed-ID: 16195558  |  Reference-DOI: 10.1110/PS.051706105
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYPE III SECRETION PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBA1493
    Expression System Strain: BL21(DE3)CODONPLUS-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLAMID
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (2x): A (2x)B (2x)C (2x)D (2x)E (2x)F (2x)G (2x)H (2x)
Biological Unit 6 (2x): A (2x)B (2x)C (2x)D (2x)E (2x)F (2x)G (2x)H (2x)
Biological Unit 7 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)
Biological Unit 8 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)
Biological Unit 9 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)
Biological Unit 10 (1x): A (1x)B (1x)C (1x)D (1x)  G (1x)H (1x)
Biological Unit 11 (1x): A (1x)B (1x)C (1x)D (1x)  G (1x)H (1x)
Biological Unit 12 (1x): A (1x)B (1x)  E (1x)F (1x)G (1x)H (1x)
Biological Unit 13 (1x): A (1x)B (1x)  E (1x)F (1x)G (1x)H (1x)
Biological Unit 14 (1x): A (1x)B (1x)    G (1x)H (1x)
Biological Unit 15 (1x):   C (1x)D (1x)E (1x)F (1x)  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZW0)

(-) Sites  (0, 0)

(no "Site" information available for 1ZW0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZW0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZW0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZW0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZW0)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZW0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:65
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:65
                                    10        20        30        40        50        60     
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDL 65
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  1zw0 A  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDL 65
                                    10        20        30        40        50        60     


Chain B from PDB  Type:PROTEIN  Length:59
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:66
                                    10        20        30        40        50        60      
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1zw0 B  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMM-------YQVWQRESKALESAIAIIHYVAGDLK 66
                                    10        20        30  |      -|       50        60      
                                                           33      41                         


Chain C from PDB  Type:PROTEIN  Length:52
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:58
                                    10        20        30        40        50        
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAII 58
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.......------.....hhhhhhhh.hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                  1zw0 C  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRG------QVWQRESKALESAIAII 58
                                    10        20        30    |    - |      50        
                                                             35     42                


Chain D from PDB  Type:PROTEIN  Length:66
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:66
                                    10        20        30        40        50        60      
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh.hhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1zw0 D  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
                                    10        20        30        40        50        60      


Chain E from PDB  Type:PROTEIN  Length:65
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:65
                                    10        20        30        40        50        60     
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDL 65
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh..........hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  1zw0 E  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDL 65
                                    10        20        30        40        50        60     


Chain F from PDB  Type:PROTEIN  Length:52
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:66
                                    10        20        30        40        50        60      
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...--------------hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1zw0 F  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDM--------------ESKALESAIAIIHYVAGDLK 66
                                    10        20        30 |       -      | 50        60      
                                                          32             47                   


Chain G from PDB  Type:PROTEIN  Length:54
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:64
                                    11        21        31        41        51        61    
          O68692_YERPE    2 TQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDL 65
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh----------hh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  1zw0 G  2 TQLEEQLHNVETVRSITMQLEMALTKLKKDMM----------WQRESKALESAIAIIHYVAGDL 65
                                    11        21        31 |       -  |     51        61    
                                                          33         44                     


Chain H from PDB  Type:PROTEIN  Length:66
 aligned with O68692_YERPE | O68692 from UniProtKB/TrEMBL  Length:66

    Alignment length:66
                                    10        20        30        40        50        60      
          O68692_YERPE    1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  1zw0 H  1 MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66
                                    10        20        30        40        50        60
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZW0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZW0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZW0)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (O68692_YERPE | O68692)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.

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  1zw0
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 Related Entries

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        O68692_YERPE | O68692: 2p58

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