1ZTP - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   X-RAY STRUCTURE OF GENE PRODUCT FROM HOMO SAPIENS HS.433573

Authors :   G. E. Wesenberg, G. N. Phillips Jr. , E. Bitto, C. A. Bingman, S. T. M. All Center For Eukaryotic Structural Genomics (Cesg)

Date :   27 May 05 (Deposition) - 14 Jun 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: A (1x),C (1x)
Biol. Unit 5: A,B  (1x)

Keywords :   Hs. 433573, P5326, Bles03, Bc010512, Structural Genomics, Protein Structure Initiative, Psi, Cesg, Center For Eukaryotic Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Bitto, C. A. Bingman, H. Robinson, S. T. Allard, G. E. Wesenberg, G. N. Phillips
The Structure At 2. 5 A Resolution Of Human Basophilic Leukemia-Expressed Protein Bles03.
Acta Crystallogr. , Sect. F V. 61 812 2005
PubMed-ID: 16511166 | Reference-DOI: 10.1107/S1744309105023845

Molecule 1 - BASOPHILIC LEUKEMIA EXPRESSED PROTEIN BLES03
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP 16
	Expression System Strain	:	B834 P(RARE2)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HS.433573
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:	A (1x)		C (1x)
Biological Unit 5 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 6)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1ZTP)

(no "SS Bond" information available for 1ZTP)

(no "Cis Peptide Bond" information available for 1ZTP)

Asymmetric Unit (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	A/B/C	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	A	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	B	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	C	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	A/C	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_060319	Q	154	R	CK068_HUMAN	Polymorphism	7947504	A/B	R	154	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1ZTP)

(no "Exon" information available for 1ZTP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:228
 aligned with CK068_HUMAN | Q9H3H3 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:234
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246    
          CK068_HUMAN    17 EDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVEL 250
               SCOP domains d1ztpa1 A:17-250 Basophilic leukemia expressed protein BLES03                                                                                                                                                                              SCOP domains
               CATH domains ----------------1ztpA01 A:33-250 RNA Cap, Translation Initiation Factor Eif4e                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh........eeee....hhhhhhhhhhhh.....................eeee.........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhh....eeee.........eeeeeee....hhhhhhhhhhhhhhh.....eeeeehhhhhh..............eeee..------..eeee....ee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ztp A  17 EDGFTAEHLAAEAmAADmDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLmHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQ------GSRVLDRANNVEL 250
                                    26   |   |36        46        56        66        76        86        96       106       116       126    |  136       146       156       166       176       186       196       206       216       226    |    - |     246    
                                        30-MSE                                                                                              131-MSE                                                                                             231    238            
                                            34-MSE

Chain B from PDB  Type:PROTEIN  Length:235
 aligned with CK068_HUMAN | Q9H3H3 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:235
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246     
          CK068_HUMAN    17 EDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT 251
               SCOP domains d1ztpb_ B: Basophilic leukemia expressed protein BLES03                                                                                                                                                                                     SCOP domains
               CATH domains ----------------1ztpB01 B:33-251 RNA Cap, Translation Initiation Factor Eif4e                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhh.....................eeee.........hhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhh....eeee.........eeeeeee....hhhhhhhhhhhhhhh.....eeeeehhhhhh..............eeeee........eeeee....eeee Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ztp B  17 EDGFTAEHLAAEAmAADmDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLmHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT 251
                                    26   |   |36        46        56        66        76        86        96       106       116       126    |  136       146       156       166       176       186       196       206       216       226       236       246     
                                        30-MSE                                                                                              131-MSE                                                                                                                    
                                            34-MSE

Chain C from PDB  Type:PROTEIN  Length:221
 aligned with CK068_HUMAN | Q9H3H3 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:221
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249 
          CK068_HUMAN    30 MAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVEL 250
               SCOP domains d1ztpc_ C: Basophilic leukemia expressed protein BLES03                                                                                                                                                                       SCOP domains
               CATH domains -1ztpC00 C:31-250 RNA Cap, Translation Initiation Factor Eif4e                                                                                                                                                                CATH domains
           Pfam domains (1) DUF1917-1ztpC01 C:30-212                                                                                                                                                               -------------------------------------- Pfam domains (1)
           Pfam domains (2) DUF1917-1ztpC02 C:30-212                                                                                                                                                               -------------------------------------- Pfam domains (2)
           Pfam domains (3) DUF1917-1ztpC03 C:30-212                                                                                                                                                               -------------------------------------- Pfam domains (3)
         Sec.struct. author ........eeee....hhhhhhhhhhhh.....................eeee.........hhhhhhhhhhhhhhh....hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhh....eeee.........eeeeeee....hhhhhhhhhhhhhhh.....eeeeehhhhhh..............eeeee........eeeee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ztp C  30 mAADmDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLmHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVEL 250
                            |   |   39        49        59        69        79        89        99       109       119       129 |     139       149       159       169       179       189       199       209       219       229       239       249 
                           30-MSE                                                                                              131-MSE                                                                                                                   
                               34-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: eIF4e-like (28)

Superfamily: eIF4e-like (28)

Family: BLES03-like (2)

Protein domain: Basophilic leukemia expressed protein BLES03 (2)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d1ztpa1	A:17-250
1b	d1ztpb_	B:
1c	d1ztpc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: RNA Cap, Translation Initiation Factor Eif4e (11)

Homologous Superfamily: RNA Cap, Translation Initiation Factor Eif4e (11)

Human (Homo sapiens) (5)

1a	1ztpA01	A:33-250
1b	1ztpB01	B:33-251
1c	1ztpC00	C:31-250

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: DUF1917] (2)

Family: DUF1917 (2)

Homo sapiens (Human) (2)

1a	DUF1917-1ztpC01	C:30-212
1b	DUF1917-1ztpC02	C:30-212
1c	DUF1917-1ztpC03	C:30-212

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (CK068_HUMAN | Q9H3H3)

molecular function
	GO:0005515		protein binding		Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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Description

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Ligands, Modified Residues, Ions (1, 9)

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