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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE LACTOCOCCUS LACTIS MG1363 DPSB PROTEIN
 
Authors :  T. J. Stillman, M. Upadhyay, V. A. Norte, S. E. Sedelnikova, M. Carradus, S. Tzokov, P. A. Bullough, C. A. Shearman, M. J. Gasson, C. H. Williams, P. J. Artymiuk, J. Green
Date :  23 May 05  (Deposition) - 30 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Oxidative Stress, Dps, Dna Binding, Lactic Acid Bacteria, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Stillman, M. Upadhyay, V. A. Norte, S. E. Sedelnikova, M. Carradus, S. Tzokov, P. A. Bullough, C. A. Shearman, M. J. Gasson, C. H. Williams, P. J. Artymiuk, J. Green
The Crystal Structures Of Lactococcus Lactis Mg1363 Dps Proteins Reveal The Presence Of An N-Terminal Helix That Is Required For Dna Binding.
Mol. Microbiol. V. 57 1101 2005
PubMed-ID: 16091047  |  Reference-DOI: 10.1111/J.1365-2958.2005.04757.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LACTOCOCCUS LACTIS MG1363 DPSA
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FLPB
    Organism Scientific: LACTOCOCCUS LACTIS
    Organism Taxid: 1358

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZS3)

(-) Sites  (0, 0)

(no "Site" information available for 1ZS3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZS3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZS3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZS3)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZS3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3a1 A:3-173 Dodecameric ferritin homolog                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 A   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3b_ B: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 B   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain C from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3c_ C: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 C   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain D from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3d_ D: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 D   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain E from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3e_ E: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 E   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain F from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3f_ F: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 F   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain G from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3g_ G: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 G   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain H from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3h_ H: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 H   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain I from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3i_ I: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 I   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain J from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3j_ J: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 J   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain K from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3k_ K: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 K   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 


Chain L from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d1zs3l_ L: Dodecameric ferritin homolog                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zs3 L   3 TKLMIDEKYAKELDKAEIDHHKPTAGAMLGHVLSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLGKSVADF 173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZS3)

(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1zuj THE LACTOCOCCUS LACTIS MG1363 DPSB PROTEIN