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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN Q8PZK8 FROM METHANOSARCINA MAZEI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MAR9.
 
Authors :  A. P. Kuzin, M. Abashidze, S. M. Vorobiev, W. Yong, R. Xiao, L. -C. Ma, T. Acton, G. T. Montelione, L. Tong, J. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  18 May 05  (Deposition) - 31 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  X-Ray, Nesg, Mar9, Q8Pzk8, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, M. Abashidze, S. M. Vorobiev, W. Yong, R. Xiao, L. -C. Ma, T. Acton, G. T. Montelione, L. Tong, J. Hunt
X-Ray Structure Of The Hypothetical Protein Q8Pzk8 From Methanosarcina Mazei At The Resolution 2. 1A. Northeast Structural Genomics Consortium Target Mar9.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MM0484
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: METHANOSARCINA MAZEI
    Organism Taxid: 2209

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric/Biological Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ZQ7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZQ7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZQ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZQ7)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMMECR1PS51112 AMMECR1 domain profile.Y484_METMA5-196
 
 
 		  4A:5-196
B:5-196
C:5-196
D:5-196

(-) Exons   (0, 0)

(no "Exon" information available for 1ZQ7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
 aligned with Y484_METMA | Q8PZK8 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:204
                                                                                                                                                                                                                                199     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        |-    
           Y484_METMA     1 MLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKF-----   -
               SCOP domains d1zq7a1 A:1-199 Hypothetical    protein MM0484                                                                                                                                                         ----- SCOP domains
               CATH domains -1zq7A01 A:2-108,A:182-204 Hy   pothetical protein ph0010; domain 1                                         1zq7A02 A:109-181 Hypothetical protein ph0010; domain 2                  1zq7A01                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....---.....hhhhhh...eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhhhheeeeeee...ee......hhhhhh.....eeeeee..eeeee..hhhhhh..hhhhhhhhhhhhh..hhhhhh...eeeee.eeeeee......eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----AMMECR1  PDB: A:5-196 UniProt: 5-196                                                                                                                                                            -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zq7 A   1 mLTETEGRAAVKLARKTIEIFLSKGKSPR---SGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEmKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDmDSIDFLSHTCmKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKFLEHHH 204
                            |       10        20        |-  |     40        50        60        70        80        90     | 100       110       120       130       140       150|      160 |     170       180       190       200    
                            |                          29  33                                                             96-MSE                                                151-MSE    162-MSE                                      
                            1-MSE                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with Y484_METMA | Q8PZK8 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:204
                                                                                                                                                                                                                                199     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        |-    
           Y484_METMA     1 MLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKF-----   -
               SCOP domains d1zq7b_ B: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains -1zq7B01 B:2-108,B:182-204 Hypothetical protein ph0010; domain 1                                            1zq7B02 B:109-181 Hypothetical protein ph0010; domain 2                  1zq7B01                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhh.eeeeeeee...ee......hhhhhh.....eeeeee..eeeee..hhhhhh..hhhhhhhhhhhhh..hhhhhh...eeeee.eeeeee......eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----AMMECR1  PDB: B:5-196 UniProt: 5-196                                                                                                                                                            -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zq7 B   1 mLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEmKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDmDSIDFLSHTCmKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKFLEHHH 204
                            |       10        20        30        40        50        60        70        80        90     | 100       110       120       130       140       150|      160 |     170       180       190       200    
                            1-MSE                                                                                         96-MSE                                                151-MSE    162-MSE                                      


Chain C from PDB  Type:PROTEIN  Length:204
 aligned with Y484_METMA | Q8PZK8 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:204
                                                                                                                                                                                                                                199     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        |-    
           Y484_METMA     1 MLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKF-----   -
               SCOP domains d1zq7c_ C: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains -1zq7C01 C:2-108,C:182-204 Hypothetical protein ph0010; domain 1                                            1zq7C02 C:109-181 Hypothetical protein ph0010; domain 2                  1zq7C01                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhh.eeeeeeee...ee......hhhhhh.....eeeeee..eeeee..hhhhhh..hhhhhhhhhhhhh...........eeeee.eeeeee......eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----AMMECR1  PDB: C:5-196 UniProt: 5-196                                                                                                                                                            -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zq7 C   1 mLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEmKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDmDSIDFLSHTCmKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKFLEHHH 204
                            |       10        20        30        40        50        60        70        80        90     | 100       110       120       130       140       150|      160 |     170       180       190       200    
                            1-MSE                                                                                         96-MSE                                                151-MSE    162-MSE                                      


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with Y484_METMA | Q8PZK8 from UniProtKB/Swiss-Prot  Length:199

    Alignment length:204
                                                                                                                                                                                                                                199     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        |-    
           Y484_METMA     1 MLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKF-----   -
               SCOP domains d1zq7d_ D: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains -1zq7D01 D:2-108,D:182-204 Hypothetical protein ph0010; domain 1                                            1zq7D02 D:109-181 Hypothetical protein ph0010; domain 2                  1zq7D01                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhh.......hhhhhh.eeeeeeee...ee......hhhhhh.....eeeeee..eeeee..hhhhhh..hhhhhhhhhhhhh...........eeeee.eeeeee......eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----AMMECR1  PDB: D:5-196 UniProt: 5-196                                                                                                                                                            -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zq7 D   1 mLTETEGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTEGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEmKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQGLLLPQVAPENDmDSIDFLSHTCmKAGLSPDAWVKGAEVYCFEGQIFKEKEPDGEVIEEKFLEHHH 204
                            |       10        20        30        40        50        60        70        80        90     | 100       110       120       130       140       150|      160 |     170       180       190       200    
                            1-MSE                                                                                         96-MSE                                                151-MSE    162-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZQ7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZQ7)

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  Y484_METMA | Q8PZK8
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 Related Entries

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(-) Related Entries Specified in the PDB File

mar9