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(-) Description

Title :  CRYSTAL STRUCTURE OF PFU-542154 CONSERVED HYPOTHETICAL PROTEIN
 
Authors :  J. E. Habel, Z. J. Liu, P. S. Horanyi, Q. J. T. Florence, W. Tempel, W. Zhou, L. Chen, D. Lee, J. Nguyen, S. H. Chang, P. Bereton, M. Izumi, F. E. Jenny Jr. , F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  13 Apr 05  (Deposition) - 17 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Habel, Z. J. Liu, P. S. Horanyi, Q. J. T. Florence, W. Tempel, W. Zhou, L. Chen, D. Lee, J. Nguyen, S. H. Chang, P. Bereton, M. Izumi, F. E. Jenny Jr. , F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, J. P. Rose, B. C. Wang
Crystal Structure Of Pfu-542154 Conserved Hypothetical Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PF0523
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24 DBAM
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF0523
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MOH3Ligand/IonMETHANOL
3UNX13Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:45 , HOH A:427 , HOH A:428 , HOH A:467 , HOH A:468 , HOH A:487BINDING SITE FOR RESIDUE MG A 200
02AC2SOFTWAREHIS A:4 , HIS A:5 , ARG A:85BINDING SITE FOR RESIDUE UNX A 401
03AC3SOFTWAREGLU A:28 , ASN A:31 , UNX A:409BINDING SITE FOR RESIDUE UNX A 402
04AC4SOFTWAREGLU A:65 , UNX A:405BINDING SITE FOR RESIDUE UNX A 403
05AC5SOFTWAREGLU A:65 , UNX A:405BINDING SITE FOR RESIDUE UNX A 404
06AC6SOFTWARELYS A:61 , UNX A:403 , UNX A:404BINDING SITE FOR RESIDUE UNX A 405
07AC7SOFTWARELYS A:61 , ALA A:144BINDING SITE FOR RESIDUE UNX A 407
08AC8SOFTWAREGLU A:28 , LYS A:32 , UNX A:402BINDING SITE FOR RESIDUE UNX A 409
09AC9SOFTWARELYS A:138 , HOH A:497BINDING SITE FOR RESIDUE UNX A 410
10BC1SOFTWAREARG A:67 , ILE A:69BINDING SITE FOR RESIDUE UNX A 411
11BC2SOFTWAREGLU A:134 , HOH A:500BINDING SITE FOR RESIDUE UNX A 412
12BC3SOFTWAREASN A:45 , LYS A:93 , VAL A:94 , GLY A:95 , MOH A:301 , HOH A:493BINDING SITE FOR RESIDUE UNX A 413
13BC4SOFTWAREASN A:45 , GLU A:47 , LYS A:93 , UNX A:413BINDING SITE FOR RESIDUE MOH A 301
14BC5SOFTWAREGLY A:107 , GLU A:122BINDING SITE FOR RESIDUE MOH A 302
15BC6SOFTWARETHR A:13 , LYS A:14 , LYS A:138 , GLU A:141 , ASP A:142BINDING SITE FOR RESIDUE MOH A 303

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:48 -A:131

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:9 -Glu A:10

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZD0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZD0)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZD0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with Q8U3E5_PYRFU | Q8U3E5 from UniProtKB/TrEMBL  Length:142

    Alignment length:141
                                1                                                                                                                                        
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136 
         Q8U3E5_PYRFU     - ----MLEIRTKVGEICISKVWLTDEQINKLFDRFKGDYQVVNAECADKVIFATIIAIKAVKEGRSIAKTVPGEILVRLSGNRQIKEAIKKVGAKEGENYIVTFGENASALLQKILSTLEIKELELERCDLEYAKKAFEDIA 137
               SCOP domains -----d1zd0a1 A:9-144 Hypothetical protein PF0523                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------CGI-121-1zd0A01 A:17-144                                                                                                         Pfam domains
         Sec.struct. author ..............eeeeeeeehhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhh..eee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zd0 A   4 HHHGSLEIRTKVGEICISKVWLTDEQINKLFDRFKGDYQVVNAECADKVIFATIIAIKAVKEGRSIAKTVPGEILVRLSGNRQIKEAIKKVGAKEGENYIVTFGENASALLQKILSTLEIKELELERCDLEYAKKAFEDIA 144
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZD0)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CGI-121] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZD0)

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  1zd0
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