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(-) Description

Title :  STRUCTURE OF HOMEODOMAIN-LIKE PROTEIN OF UNKNOWN FUNCTION S4005 FROM SHIGELLA FLEXNERI
 
Authors :  J. Osipiuk, N. Maltseva, I. Dementieva, S. Clancy, F. Collart, A. Joach Midwest Center For Structural Genomics (Mcsg)
Date :  21 Mar 05  (Deposition) - 03 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Hypothetical Protein, Shigella Flexneri, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, N. Maltseva, I. Dementieva, S. Clancy, F. Collart, A. Joachimiak
Structure Of Yidb Protein From Shigella Flexneri Shows A Ne Fold With Homeodomain Motif.
Proteins V. 65 509 2006
PubMed-ID: 16927377  |  Reference-DOI: 10.1002/PROT.21054

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN S4005
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: YIDB
    Organism Scientific: SHIGELLA FLEXNERI 2A
    Organism Taxid: 198215
    Strain: 2457T

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2NA1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:33 , ASN A:73 , SER A:76 , ASP A:77 , GLN A:80 , HOH A:303BINDING SITE FOR RESIDUE NA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z67)

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
 aligned with Q83IZ7_SHIFL | Q83IZ7 from UniProtKB/TrEMBL  Length:132

    Alignment length:129
                                    12        22        32        42        52        62        72        82        92       102       112       122         
         Q83IZ7_SHIFL     3 LFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEVSAQANNDLLSAGMELLKGKLF 131
               SCOP domains d1z67a1 A:3-131 Hypothetical protein YidB                                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains DUF937-1z67A01 A:3-107                                                                                   ------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......--....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z67 A   3 LFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEV--QANNDLLSAGmELLKGKLF 131
                                    12        22        32        42        52        62        72        82        92       102       | -|      122|        
                                                                                                                                     110  |       123-MSE    
                                                                                                                                        113
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z67)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF937] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  1z67
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