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(-) Description

Title :  STRUCTURE OF THE SWI2/SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC RAD54
 
Authors :  N. H. Thoma, B. K. Czyzewski, A. A. Alexeev, A. V. Mazin, S. C. Kowalczyko N. P. Pavletich
Date :  12 Mar 05  (Deposition) - 05 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (1x)
Biol. Unit 2:  X  (6x)
Biol. Unit 3:  X  (2x)
Keywords :  Recombination Atpase Helicase, Recombination-Dna Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Thoma, B. K. Czyzewski, A. A. Alexeev, A. V. Mazin, S. C. Kowalczykowski, N. P. Pavletich
Structure Of The Swi2/Snf2 Chromatin-Remodeling Domain Of Eukaryotic Rad54.
Nat. Struct. Mol. Biol. V. 12 350 2005
PubMed-ID: 15806108  |  Reference-DOI: 10.1038/NSMB919

(-) Compounds

Molecule 1 - SIMILAR TO RAD54-LIKE
    Chains: X
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: PROTEOLYTIC FRAGMENT
    Organism Common: ZEBRAFISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (1x): X
Biological Unit 2 (6x): X
Biological Unit 3 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1SO49Ligand/IonSULFATE ION
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1SO49Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 54)
No.NameCountTypeFull Name
1SO454Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 18)
No.NameCountTypeFull Name
1SO418Ligand/IonSULFATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS X:670 , CYS X:675 , CYS X:678 , HIS X:702BINDING SITE FOR RESIDUE ZN X 900
02AC2SOFTWAREGLN X:151 , GLY X:182 , ARG X:603 , ASP X:604BINDING SITE FOR RESIDUE SO4 X 901
03AC3SOFTWAREGLY X:180 , LEU X:181 , GLY X:182 , LYS X:183 , THR X:184 , CYS X:572 , GLY X:573 , ARG X:600 , ARG X:603BINDING SITE FOR RESIDUE SO4 X 902
04AC4SOFTWAREALA X:111 , LEU X:112 , ARG X:152 , LYS X:156BINDING SITE FOR RESIDUE SO4 X 903
05AC5SOFTWAREARG X:388 , THR X:390 , ARG X:676BINDING SITE FOR RESIDUE SO4 X 736
06AC6SOFTWAREPRO X:213 , SER X:214 , SER X:268 , TYR X:269 , GLU X:270 , ARG X:294BINDING SITE FOR RESIDUE SO4 X 737
07AC7SOFTWAREARG X:148BINDING SITE FOR RESIDUE SO4 X 738
08AC8SOFTWARECYS X:695 , ASP X:696 , ASN X:699BINDING SITE FOR RESIDUE SO4 X 739
09AC9SOFTWARETYR X:115 , ARG X:165BINDING SITE FOR RESIDUE SO4 X 740
10BC1SOFTWAREGLN X:312 , ARG X:313BINDING SITE FOR RESIDUE SO4 X 742

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z3I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z3I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z3I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z3I)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z3I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:644
 aligned with Q7ZV09_DANRE | Q7ZV09 from UniProtKB/TrEMBL  Length:738

    Alignment length:644
                                   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731    
         Q7ZV09_DANRE    92 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 735
               SCOP domains d1z3ix2 X:92-389 Rad54-like, Rad54L                                                                                                                                                                                                                                                                       d1z3ix1 X:390-735 Rad54-like, Rad54L                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eee.....hhhhhhhhhhhhh...ee.hhhhhh..hhhhhhhhhhhhhhhh........eeee......hhhhhhhhhhhhhhhh..........eeeeehhhhhhhhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhh.........eeeeehhhhhhhh.........eeee.hhhhh...hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhee..hhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh..........hhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh......eeeee.hhh........eeeeee.....hhhhhhhhhh..........eeeeeeee..hhhhhhhhhhhhhhhh...............hhhhhhhhh.......hhhhhhhh...ee..ee............hhhhheee.......hhhhhhhh...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3i X  92 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 735
                                   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z3I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Z3I)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain X   (Q7ZV09_DANRE | Q7ZV09)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008094    DNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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