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(-) Description

Title :  CRYSTAL STRUCTURE OF COMPLEX BETWEEN PVS25 AND FAB FRAGMENT OF MALARIA TRANSMISSION BLOCKING ANTIBODY 2A8
 
Authors :  A. K. Saxena, K. Singh, H. P. Su, M. M. Klein, A. W. Stowers, A. J. Saul, C. A D. N. Garboczi
Date :  12 Mar 05  (Deposition) - 06 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,H,I,L,M
Biol. Unit 1:  A,H,L  (1x)
Biol. Unit 2:  B,I,M  (1x)
Keywords :  2A8 Fab, Pvs25, Immune System-Cell Adhesion Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Saxena, K. Singh, H. P. Su, M. M. Klein, A. W. Stowers, A. J. Saul, C. A. Long, D. N. Garboczi
The Essential Mosquito-Stage P25 And P28 Proteins From Plasmodium Form Tile-Like Triangular Prisms
Nat. Struct. Mol. Biol. V. 13 90 2006
PubMed-ID: 16327807  |  Reference-DOI: 10.1038/NSMB1024

(-) Compounds

Molecule 1 - 2A8 FAB LIGHT CHAIN
    Chains: L, M
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell: HYBRIDOMA
    Expression System Common: HOUSE MOUSE
    Expression System Taxid: 10090
    Fragment: FAB LIGHT CHAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - 2A8 FAB HEAVY CHAIN
    Chains: H, I
    Engineered: YES
    Expression System: MUS MUSCULUS
    Expression System Cell: HYBRIDOMA
    Expression System Common: HOUSE MOUSE
    Expression System Taxid: 10090
    Fragment: FAB HEAVY CHAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - OOKINETE SURFACE PROTEIN PVS25
    Chains: A, B
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Plasmid: YEPRPEU-3
    Expression System Strain: VK1
    Expression System Taxid: 4932
    Expression System Vector Type: PLASMID
    Organism Scientific: PLASMODIUM VIVAX SAI-1
    Organism Taxid: 126793
    Strain: SALI

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABHILM
Biological Unit 1 (1x): A H L 
Biological Unit 2 (1x):  B I M

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Z3G)

(-) Sites  (0, 0)

(no "Site" information available for 1Z3G)

(-) SS Bonds  (29, 29)

Asymmetric Unit
No.Residues
1A:8 -A:22
2A:24 -A:36
3A:42 -A:57
4A:51 -A:71
5A:73 -A:84
6A:89 -A:100
7A:94 -A:113
8A:115 -A:129
9A:137 -A:148
10A:141 -A:157
11B:8 -B:22
12B:24 -B:36
13B:42 -B:57
14B:51 -B:71
15B:73 -B:84
16B:89 -B:100
17B:94 -B:113
18B:115 -B:129
19B:137 -B:148
20B:141 -B:157
21B:159 -B:172
22H:22 -H:96
23H:142 -H:197
24I:22 -I:96
25I:142 -I:197
26L:23 -L:87
27L:133 -L:193
28M:23 -M:87
29M:133 -M:193

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ser L:7 -Pro L:8
2Asn L:93 -Pro L:94
3Tyr L:139 -Pro L:140
4Ser M:7 -Pro M:8
5Asn M:93 -Pro M:94
6Tyr M:139 -Pro M:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z3G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z3G)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z3G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with O96555_PLAVI | O96555 from UniProtKB/TrEMBL  Length:219

    Alignment length:173
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
         O96555_PLAVI    23 AVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCL 195
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................eeee..eee............eee..eeeee.........eeeee...eee....eee.hhh........eeeeehhhhh.eeeee.....eeehhhh.eeee................eeee..eeee......ee......ee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g A   1 AVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCL 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with O96555_PLAVI | O96555 from UniProtKB/TrEMBL  Length:219

    Alignment length:173
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   
         O96555_PLAVI    23 AVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCL 195
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Plasmod_Pvs28-1z3gB01 B:1-173                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) Plasmod_Pvs28-1z3gB02 B:1-173                                                                                                                                                 Pfam domains (2)
         Sec.struct. author .............eee..eee......eeeee..eeee...........eee..eeeee.........eeeee...eee....eee...........eeee..hhhhh...eeee......hhhhh....................eee......eee............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g B   1 AVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCL 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   


Chain H from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains -----------------------------------------------------------------------------------------------------------------d1z3gh1 H:116-216 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1z3gH01 H:3-115 Immunoglobulins                                                                                  1z3gH02 H:116-214 Immunoglobulins                                                                  -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.....eeee......hhhhh.eeeeee.....eeeeeeee....eeee.......eeeeee....eeeeee...hhhhh.eeeeee..........eeeee........eeeee..........eeeeeeeeeee.....eeee.........ee...ee....eeeeeeeeee.hhhhhh..eeeeeehhh.eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g H   3 QLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGMIHPHSGSTNYNEKFKSKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARGWDVAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    


Chain I from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains -----------------------------------------------------------------------------------------------------------------d1z3gi1 I:116-216 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1z3gI01 I:3-115 Immunoglobulins                                                                                  1z3gI02 I:116-214 Immunoglobulins                                                                  -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeee.....eeee.ee.........eeeeee......eeeeee......eee.........ee.hhhhh..eeee.........eeeeee..........eeeee.........eeee...........eeeeeeeeee.......ee.hhh....eeeeeeeee..eeeeeeeeee..........eeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g I   3 QLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGMIHPHSGSTNYNEKFKSKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARGWDVAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD 216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d1z3gl1 L:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                d1z3gl2 L:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa                                SCOP domains
               CATH domains 1z3gL01 L:1-107 Immunoglobulins                                                                            1z3gL02 L:108-210 Immunoglobulins                                                                      --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeee.....eeeeeeeeeee...eeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee.....eee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g L   1 QIVLTQSPAIMSASPGEKVTMTCSASSSVSYMNWYQQKSGTSPKRWIYDTSKLASGVPAHFRGSGSGTSYSLTISGMEAEDAATYYCQQWSSNPPTFGSGTKLEINRADTAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain M from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d1z3gm1 M:1-106 Immunoglobulin light chain kappa variable domain, VL-kappa                                d1z3gm2 M:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa                                SCOP domains
               CATH domains 1z3gM01 M:1-107 Immunoglobulins                                                                            1z3gM02 M:108-210 Immunoglobulins                                                                      --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeeeeeee...eeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee.....eee.........eeeeeeeeeehhhhhh..eeeeeeee..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z3g M   1 QIVLTQSPAIMSASPGEKVTMTCSASSSVSYMNWYQQKSGTSPKRWIYDTSKLASGVPAHFRGSGSGTSYSLTISGMEAEDAATYYCQQWSSNPPTFGSGTKLEINRADTAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
House mouse (Mus musculus) (616)
1a1z3gL02L:108-210
1b1z3gH02H:116-214
1c1z3gI02I:116-214
1d1z3gH01H:3-115
1e1z3gI01I:3-115
1f1z3gM02M:108-210
1g1z3gL01L:1-107
1h1z3gM01M:1-107

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Plasmod_Pvs28] (3)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (O96555_PLAVI | O96555)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Asn L:93 - Pro L:94   [ RasMol ]  
    Asn M:93 - Pro M:94   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
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  1z3g
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O96555_PLAVI | O96555: 1z1y 1z27

(-) Related Entries Specified in the PDB File

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