1YXU - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF KINASE PIM1 IN COMPLEX WITH AMP

Authors :   A. Kumar, V. Mandiyan, Y. Suzuki, C. Zhang, J. Rice, J. Tsai, D. R. Artis, P. Ibrahim, R. Bremer

Date :   22 Feb 05 (Deposition) - 26 Apr 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.24

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Ser/Thr Protein Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kumar, V. Mandiyan, Y. Suzuki, C. Zhang, J. Rice, J. Tsai, D. R. Artis P. Ibrahim, R. Bremer
Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma.
J. Mol. Biol. V. 348 183 2005
PubMed-ID: 15808862 | Reference-DOI: 10.1016/J.JMB.2005.02.039

Molecule 1 - PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1
	Chains	:	A, B, C, D
	EC Number	:	2.7.1.37
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	CATALYTIC DOMAIN
	Gene	:	PIM1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	IMD	4	Ligand/Ion	IMIDAZOLE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	IMD	1	Ligand/Ion	IMIDAZOLE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	IMD	1	Ligand/Ion	IMIDAZOLE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	IMD	1	Ligand/Ion	IMIDAZOLE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	AMP	1	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	IMD	1	Ligand/Ion	IMIDAZOLE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:130 , THR A:134 , ASP A:170 , ASP A:234 , GLY A:238 , ASP A:239	BINDING SITE FOR RESIDUE IMD A 500
2	AC2	SOFTWARE	PHE B:130 , ILE B:133 , THR B:134 , ASP B:170 , ASP B:234 , GLY B:238 , ASP B:239	BINDING SITE FOR RESIDUE IMD B 600
3	AC3	SOFTWARE	PHE C:130 , THR C:134 , ASP C:170 , ASP C:234 , GLY C:238	BINDING SITE FOR RESIDUE IMD C 700
4	AC4	SOFTWARE	PHE D:130 , ILE D:133 , THR D:134 , ASP D:170 , ASP D:234 , GLY D:238 , ASP D:239	BINDING SITE FOR RESIDUE IMD D 800
5	AC5	SOFTWARE	LEU A:44 , PHE A:49 , ALA A:65 , LYS A:67 , GLU A:89 , ILE A:104 , LEU A:120 , GLU A:171 , ASN A:172 , LEU A:174 , ILE A:185 , ASP A:186 , HOH A:626	BINDING SITE FOR RESIDUE AMP A 550
6	AC6	SOFTWARE	LEU B:44 , PHE B:49 , VAL B:52 , ALA B:65 , LYS B:67 , ILE B:104 , LEU B:120 , VAL B:126 , GLU B:171 , ASN B:172 , ILE B:185 , ASP B:186	BINDING SITE FOR RESIDUE AMP B 650
7	AC7	SOFTWARE	LEU C:44 , PHE C:49 , ALA C:65 , LYS C:67 , ILE C:104 , LEU C:120 , ARG C:122 , VAL C:126 , GLU C:171 , ASN C:172 , LEU C:174 , ILE C:185 , ASP C:186	BINDING SITE FOR RESIDUE AMP C 750
8	AC8	SOFTWARE	PHE D:49 , VAL D:52 , ALA D:65 , LYS D:67 , GLU D:89 , ILE D:104 , LEU D:120 , GLU D:121 , ARG D:122 , LEU D:174 , ILE D:185 , ASP D:186	BINDING SITE FOR RESIDUE AMP D 850

(no "SS Bond" information available for 1YXU)

Asymmetric Unit

No.	Residues
1	Glu A:124	-	Pro A:125
2	Glu B:124	-	Pro B:125
3	Glu C:124	-	Pro C:125
4	Glu D:124	-	Pro D:125

Asymmetric Unit (4, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041004	Y	144	H	PIM1_HUMAN	Unclassified	---	A/B/C/D	Y	53	H
2	UniProt	VAR_041005	E	215	Q	PIM1_HUMAN	Polymorphism	---	A/B/C/D	E	124	Q
3	UniProt	VAR_041006	E	226	K	PIM1_HUMAN	Polymorphism	---	A/B/C/D	E	135	K
4	UniProt	VAR_041007	E	233	D	PIM1_HUMAN	Polymorphism	---	A/B/C/D	E	142	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041004	Y	144	H	PIM1_HUMAN	Unclassified	---	A	Y	53	H
2	UniProt	VAR_041005	E	215	Q	PIM1_HUMAN	Polymorphism	---	A	E	124	Q
3	UniProt	VAR_041006	E	226	K	PIM1_HUMAN	Polymorphism	---	A	E	135	K
4	UniProt	VAR_041007	E	233	D	PIM1_HUMAN	Polymorphism	---	A	E	142	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041004	Y	144	H	PIM1_HUMAN	Unclassified	---	B	Y	53	H
2	UniProt	VAR_041005	E	215	Q	PIM1_HUMAN	Polymorphism	---	B	E	124	Q
3	UniProt	VAR_041006	E	226	K	PIM1_HUMAN	Polymorphism	---	B	E	135	K
4	UniProt	VAR_041007	E	233	D	PIM1_HUMAN	Polymorphism	---	B	E	142	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041004	Y	144	H	PIM1_HUMAN	Unclassified	---	C	Y	53	H
2	UniProt	VAR_041005	E	215	Q	PIM1_HUMAN	Polymorphism	---	C	E	124	Q
3	UniProt	VAR_041006	E	226	K	PIM1_HUMAN	Polymorphism	---	C	E	135	K
4	UniProt	VAR_041007	E	233	D	PIM1_HUMAN	Polymorphism	---	C	E	142	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041004	Y	144	H	PIM1_HUMAN	Unclassified	---	D	Y	53	H
2	UniProt	VAR_041005	E	215	Q	PIM1_HUMAN	Polymorphism	---	D	E	124	Q
3	UniProt	VAR_041006	E	226	K	PIM1_HUMAN	Polymorphism	---	D	E	135	K
4	UniProt	VAR_041007	E	233	D	PIM1_HUMAN	Polymorphism	---	D	E	142	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	PIM1_HUMAN	135-158	4	A:44-67 B:44-67 C:44-67 D:44-67
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	PIM1_HUMAN	254-266	4	A:163-175 B:163-175 C:163-175 D:163-175

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	PIM1_HUMAN	135-158	1	A:44-67 - - -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	PIM1_HUMAN	254-266	1	A:163-175 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	PIM1_HUMAN	135-158	1	- B:44-67 - -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	PIM1_HUMAN	254-266	1	- B:163-175 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	PIM1_HUMAN	135-158	1	- - C:44-67 -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	PIM1_HUMAN	254-266	1	- - C:163-175 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	PIM1_HUMAN	135-158	1	- - - D:44-67
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	PIM1_HUMAN	254-266	1	- - - D:163-175

(no "Exon" information available for 1YXU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:273
 aligned with PIM1_HUMAN | P11309 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:273
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
           PIM1_HUMAN   124 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 396
               SCOP domains d1yxua_ A: Proto-oncogene serine/threonine-protein kinase Pim-1                                                                                                                                                                                                                   SCOP domains
               CATH domains 1yxuA01 A:33-124 Phosphorylase Kinase; domain 1                                             1yxuA02 A:125-305 Transferase(Phosphotransferase) domain 1                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee....eeeeeee....eeeeeeeee......eee.....eeehhhhhhhhhh........eeeeeee..eeeeeee....eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee...........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------H----------------------------------------------------------------------Q----------K------D------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------PROTEIN_KINASE_ATP      -----------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yxu A  33 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 305
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302

Chain B from PDB  Type:PROTEIN  Length:273
 aligned with PIM1_HUMAN | P11309 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:273
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
           PIM1_HUMAN   124 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 396
               SCOP domains d1yxub_ B: Proto-oncogene serine/threonine-protein kinase Pim-1                                                                                                                                                                                                                   SCOP domains
               CATH domains 1yxuB01 B:33-124 Phosphorylase Kinase; domain 1                                             1yxuB02 B:125-305 Transferase(Phosphotransferase) domain 1                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..eeeeeeee.....eeeeeeee.hhh..eee.....eeehhhhhhhhhh........eeeeee...eeeeeee....eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee...........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------H----------------------------------------------------------------------Q----------K------D------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------PROTEIN_KINASE_ATP      -----------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yxu B  33 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 305
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302

Chain C from PDB  Type:PROTEIN  Length:272
 aligned with PIM1_HUMAN | P11309 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:272
                                   134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394  
           PIM1_HUMAN   125 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 396
               SCOP domains d1yxuc_ C: Proto-oncogene serine/threonine-protein kinase Pim-1                                                                                                                                                                                                                  SCOP domains
               CATH domains 1yxuC01 C:34-124 Phosphorylase Kinase; domain 1                                            1yxuC02 C:125-305 Transferase(Phosphotransferase) domain 1                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee.....eeeeeeee.hhh..eee.....eeehhhhhhhhh.........eeeeee...eeeeeee....eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee...........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------H----------------------------------------------------------------------Q----------K------D------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------PROTEIN_KINASE_ATP      -----------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yxu C  34 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 305
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303

Chain D from PDB  Type:PROTEIN  Length:273
 aligned with PIM1_HUMAN | P11309 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:273
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
           PIM1_HUMAN   124 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 396
               SCOP domains d1yxud_ D: Proto-oncogene serine/threonine-protein kinase Pim-1                                                                                                                                                                                                                   SCOP domains
               CATH domains 1yxuD01 D:33-124 Phosphorylase Kinase; domain 1                                             1yxuD02 D:125-305 Transferase(Phosphotransferase) domain 1                                                                                                                            CATH domains
           Pfam domains (1) -----Pkinase-1yxuD01 D:38-290                                                                                                                                                                                                                                     --------------- Pfam domains (1)
           Pfam domains (2) -----Pkinase-1yxuD02 D:38-290                                                                                                                                                                                                                                     --------------- Pfam domains (2)
           Pfam domains (3) -----Pkinase-1yxuD03 D:38-290                                                                                                                                                                                                                                     --------------- Pfam domains (3)
           Pfam domains (4) -----Pkinase-1yxuD04 D:38-290                                                                                                                                                                                                                                     --------------- Pfam domains (4)
         Sec.struct. author .....eeeeeeeeee..eeeeeeee....eeeeeeeee.hhh..eee.....eeehhhhhhhhhh........eeeeee...eeeeeee....eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee...........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------H----------------------------------------------------------------------Q----------K------D------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------PROTEIN_KINASE_ATP      -----------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yxu D  33 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH 305
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: Proto-oncogene serine/threonine-protein kinase Pim-1 (64)

Human (Homo sapiens) [TaxId: 9606] (64)

1a	d1yxua_	A:
1b	d1yxub_	B:
1c	d1yxuc_	C:
1d	d1yxud_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Phosphorylase Kinase; domain 1 (1392)

Homologous Superfamily: Phosphorylase Kinase; domain 1 (1392)

Human (Homo sapiens) (1036)

1a	1yxuA01	A:33-124
1b	1yxuB01	B:33-124
1c	1yxuD01	D:33-124
1d	1yxuC01	C:34-124

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Transferase(Phosphotransferase); domain 1 (1379)

Homologous Superfamily: Transferase(Phosphotransferase) domain 1 (1379)

Human (Homo sapiens) (1049)

2a	1yxuA02	A:125-305
2b	1yxuB02	B:125-305
2c	1yxuC02	C:125-305
2d	1yxuD02	D:125-305

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PKinase (934)

Family: Pkinase (680)

Homo sapiens (Human) (521)

1a	Pkinase-1yxuD01	D:38-290
1b	Pkinase-1yxuD02	D:38-290
1c	Pkinase-1yxuD03	D:38-290
1d	Pkinase-1yxuD04	D:38-290

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PIM1_HUMAN | P11309)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0043024	ribosomal small subunit binding	Interacting selectively and non-covalently with any part of the small ribosomal subunit.
	GO:0008134	transcription factor binding	Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0008283	cell proliferation	The multiplication or reproduction of cells, resulting in the expansion of a cell population.
	GO:0030212	hyaluronan metabolic process	The chemical reactions and pathways involving hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0043433	negative regulation of sequence-specific DNA binding transcription factor activity	Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0031659	positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle	Any process that activates or increases the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity contributing to the G1/S transition of the cell cycle.
	GO:0046777	protein autophosphorylation	The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0070561	vitamin D receptor signaling pathway	The series of molecular signals generated as a consequence of a vitamin D receptor binding to one of its physiological ligands.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	1yxu
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	2.7.1.37
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Description

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