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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PSEUDOMONAS AERUGINOSA PROTEIN PA4608. NORTHEAST STRUCTURAL GENOMICS TARGET PAT7
 
Authors :  T. A. Ramelot, A. A. Yee, J. R. Cort, A. Semesi, C. H. Arrowsmith, M. A. Ken Northeast Structural Genomics Consortium (Nesg)
Date :  18 Feb 05  (Deposition) - 29 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Pa4608, Pat7, Beta Barrel, Pilz Domain, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Ramelot, A. Yee, J. R. Cort, A. Semesi, C. H. Arrowsmith, M. A. Kennedy
Nmr Structure And Binding Studies Confirm That Pa4608 From Pseudomonas Aeruginosa Is A Pilz Domain And A C-Di-Gmp Binding Protein.
Proteins V. 66 266 2007
PubMed-ID: 17096419  |  Reference-DOI: 10.1002/PROT.21199

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PA4608
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11
    Expression System Strain: BL21 (LAMDA DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PA4608
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YWU)

(-) Sites  (0, 0)

(no "Site" information available for 1YWU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YWU)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
 aligned with CDGBP_PSEAE | Q9HVI1 from UniProtKB/Swiss-Prot  Length:125

    Alignment length:125
                                    10        20        30        40        50        60        70        80        90       100       110       120     
          CDGBP_PSEAE     1 MSDQHDERRRFHRIAFDADSEILQGERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARDGLLGFECQHIDLDSISHLRRLVELNLGDEELLERELALLVSAHDD 125
               SCOP domains d1ywua1 A:1-125 Hypothetical protein PA4608                                                                                   SCOP domains
               CATH domains 1ywuA00 A:1-125 predicted glycosyltransferase like domains                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeee..eeeeeeeeee...eeeee...........eeeeeee.....eeeeeeeeeeee..eeeeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ywu A   1 MSDQHDERRRFHRIAFDADSEILQGERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARDGLLGFECQHIDLDSISHLRRLVELNLGDEELLERELALLVSAHDD 125
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YWU)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (CDGBP_PSEAE | Q9HVI1)
molecular function
    GO:0035438    cyclic-di-GMP binding    Interacting selectively and non-covalently with cyclic-di-GMP, cyclic dimeric guanosine monophosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0019932    second-messenger-mediated signaling    Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

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UniProtKB/Swiss-Prot
        CDGBP_PSEAE | Q9HVI1: 2l74

(-) Related Entries Specified in the PDB File

pat7