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(-) Description

Title :  BACTERIOPHAGE T4 CAPSID VERTEX PROTEIN GP24
 
Authors :  A. Fokine, P. G. Leiman, M. M. Shneider, B. Ahvazi, K. M. Boeshans, A. C. Steven, L. W. Black, V. V. Mesyanzhinov, M. G. Rossmann
Date :  14 Feb 05  (Deposition) - 26 Apr 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Gp24, Bacteriophage T4, Capsid Protein, Vertex, Bacteriophage, Virus, Hk97, Mad, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Fokine, P. G. Leiman, M. M. Shneider, B. Ahvazi, K. M. Boeshans, A. C. Steven, L. W. Black, V. V. Mesyanzhinov, M. G. Rossmann
Structural And Functional Similarities Between The Capsid Proteins Of Bacteriophages T4 And Hk97 Point To A Common Ancestry.
Proc. Natl. Acad. Sci. Usa V. 102 7163 2005
PubMed-ID: 15878991  |  Reference-DOI: 10.1073/PNAS.0502164102
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEAD VERTEX PROTEIN GP24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-23
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 24
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1YUE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YUE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YUE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YUE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YUE)

(-) Exons   (0, 0)

(no "Exon" information available for 1YUE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with CAPSP_BPT4 | P19896 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           CAPSP_BPT4     2 AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDNEFTFKTGATYAGEAGYVDREQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSDAASTSKFESSDSEIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEMADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRMVCEMVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDMDKMAGRSDLSVLLGVKLPK 422
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhee......eeeeeee.......-------------------...ee.............eeee..eeeee............hhhhhhhhhhhh..eee...------------........eeeeeee.eeeeeeeeee.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh............hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh......ee..............eee....eeee.......eeeee..eee..eeee..eeeee.eeee......eee.eeeeee......eeeeeeeeeeee.hhhh........................eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yue A   2 AKINELLRESTTTNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLNPDN-------------------EQITELTEESKLTLNKGDLFKYNNIVYKVLEDTPFATIEESDLELALQIAIVLLKVRLFSD------------EIADARFQINKWQTAVKSRKLKTGITVELAQDLEANGFDAPNFLEDLLATEmADEINKDILQSLITVSKRYKVTGITDSGFIDLSYASAPEAGRSLYRmVCEmVSHIQKESTYTATFCVASARAAAILAASGWLKHKPEDDKYLSQNAYGFLANGLPLYCDTNSPLDYVIVGVVENIGEKEIVGSIFYAPYTEGLDLDDPEHVGAFKVVVDPESLQPSIGLLVRYALSANPYTVAKDEKEARIIDGGDmDKmAGRSDLSVLLGVKLPK 422
                                    11        21        31        41        51        61|        -         -|       91       101       111       121       131       141|        -   |   161       171       181       191       201    |  211       221       231       241       251 |   | 261       271       281       291       301       311       321       331       341       351       361       371       381       391       401 |  |  411       421 
                                                                                       62                  82                                                         142          155                                                206-MSE                                        253-MSE                                                                                                                                               403-MSE               
                                                                                                                                                                                                                                                                                         257-MSE                                                                                                                                              406-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1YUE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YUE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YUE)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CAPSP_BPT4 | P19896)
cellular component
    GO:0039621    T=13 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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