1YR0 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PHOSPHINOTHRICIN ACETYLTRANSFERASE FROM AGROBACTERIUM TUMEFACIENS

Authors :   S. K. Burley, New York Sgx Research Center For Structural Genom (Nysgxrc)

Date :   02 Feb 05 (Deposition) - 15 Feb 05 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Protein Structure Initiative, Nysgxrc, T1682, Agr_c_1654, Phosphinothricin Acetyltransferase, Psi, New York Sgx Research Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. R. Rajashankar, R. Kniewel, K. Lee, C. D. Lima
Crystal Structure Of Phosphinothricin Acetyltransferase Fro Agrobacterium Tumefaciens
To Be Published
PubMed: search

Molecule 1 - PHOSPHINOTHRICIN ACETYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET T7
	Expression System Strain	:	B834 DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AGR_C_1654
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS STR.
	Organism Taxid	:	176299
	Strain	:	C58
	Synonym	:	AGR_C_1654P

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 17)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:91 , ARG A:96 , GLY A:97 , ILE A:100 , GLY A:101 , HOH A:1020 , HOH A:1064 , HOH A:1197 , HOH A:1207	BINDING SITE FOR RESIDUE SO4 A 1001
2	AC2	SOFTWARE	TYR A:22 , ARG A:43 , TRP A:46 , ARG A:50 , TYR A:69 , SER A:88 , TYR A:90 , HOH A:1053 , HOH A:1087 , HOH A:1245	BINDING SITE FOR RESIDUE SO4 A 1002
3	AC3	SOFTWARE	VAL B:91 , ARG B:96 , GLY B:97 , GLY B:99 , ILE B:100 , GLY B:101 , HOH B:1010 , HOH B:1034 , HOH B:1058 , HOH B:1138 , HOH B:1169 , HOH B:1172	BINDING SITE FOR RESIDUE SO4 B 1003
4	AC4	SOFTWARE	VAL C:91 , ARG C:96 , GLY C:97 , ILE C:100 , GLY C:101 , HOH C:1035 , HOH C:1094 , HOH C:1129 , HOH C:1135	BINDING SITE FOR RESIDUE SO4 C 1004
5	AC5	SOFTWARE	VAL D:91 , ARG D:96 , GLY D:97 , GLY D:99 , ILE D:100 , GLY D:101 , HOH D:1014 , HOH D:1020 , HOH D:1059	BINDING SITE FOR RESIDUE SO4 D 1005

(no "SS Bond" information available for 1YR0)

(no "Cis Peptide Bond" information available for 1YR0)

(no "SAP(SNP)/Variant" information available for 1YR0)

(no "PROSITE Motif" information available for 1YR0)

(no "Exon" information available for 1YR0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:163
 aligned with A9CJR4_AGRFC | A9CJR4 from UniProtKB/TrEMBL  Length:165

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         A9CJR4_AGRFC     2 SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL 164
               SCOP domains d1yr0a1 A:4-166 Phosphinothricin acetyltransferase                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yr0 A   4 SVELRDATVDDLSGImEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLmQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCmELKL 166
                                    13     |  23        33        43        53        63        73        83        93       103 |     113       123       133       143       153       163   
                                          19-MSE                                                                               105-MSE                                                  162-MSE

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with A9CJR4_AGRFC | A9CJR4 from UniProtKB/TrEMBL  Length:165

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         A9CJR4_AGRFC     2 SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL 164
               SCOP domains d1yr0b_ B: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yr0 B   4 SVELRDATVDDLSGImEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLmQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCmELKL 166
                                    13     |  23        33        43        53        63        73        83        93       103 |     113       123       133       143       153       163   
                                          19-MSE                                                                               105-MSE                                                  162-MSE

Chain C from PDB  Type:PROTEIN  Length:163
 aligned with A9CJR4_AGRFC | A9CJR4 from UniProtKB/TrEMBL  Length:165

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         A9CJR4_AGRFC     2 SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL 164
               SCOP domains d1yr0c_ C: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yr0 C   4 SVELRDATVDDLSGImEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLmQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCmELKL 166
                                    13     |  23        33        43        53        63        73        83        93       103 |     113       123       133       143       153       163   
                                          19-MSE                                                                               105-MSE                                                  162-MSE

Chain D from PDB  Type:PROTEIN  Length:163
 aligned with A9CJR4_AGRFC | A9CJR4 from UniProtKB/TrEMBL  Length:165

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         A9CJR4_AGRFC     2 SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL 164
               SCOP domains d1yr0d_ D: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeee..eeeeeeeeee...hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yr0 D   4 SVELRDATVDDLSGImEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLmQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCmELKL 166
                                    13     |  23        33        43        53        63        73        83        93       103 |     113       123       133       143       153       163   
                                          19-MSE                                                                               105-MSE                                                  162-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 1YR0)

(no "Pfam Domain" information available for 1YR0)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (A9CJR4_AGRFC | A9CJR4)

molecular function
	GO:0008080		N-acetyltransferase activity		Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Asymmetric Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 17)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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