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Title :   CRYSTAL STRUCTURE OF GZZ SHOWS UP PUCKERING OF THE PROLINE RING IN THE XAA POSITION.

Authors :   M. A. Schumacher, K. Mizuno, H. P. Bachinger

Date :   20 Jan 05 (Deposition) - 19 Apr 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B,D,E,F,G
Biol. Unit 1: A,B,G  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Collagen; Triple Helix; Proline Pucker, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Schumacher, K. Mizuno, H. P. Bachinger
The Crystal Structure Of The Collagen-Like Polypeptide (Glycyl-4(R)-Hydroxyprolyl-4(R)-Hydroxyprolyl)9 At 1. 55 A Resolution Shows Up-Puckering Of The Proline Ring In The Xaa Position.
J. Biol. Chem. V. 280 20397 2005
PubMed-ID: 15784619 | Reference-DOI: 10.1074/JBC.M501453200
(for further references see the PDB file header)

Molecule 1 - COLLAGEN GLY-4(R)HYP-4(R)HYP
	Chains	:	A, B, G, D, E, F
	Engineered	:	YES
	Other Details	:	SYNTHESIZED PEPTIDE USING ABI 433A SYNTHESIZER
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	D	E	F	G
Biological Unit 1 (1x)	:	A	B				G
Biological Unit 2 (1x)	:			D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 108)

No.	Name	Count	Type	Full Name
1	HYP	108	Mod. Amino Acid	4-HYDROXYPROLINE

Biological Unit 1 (1, 54)

No.	Name	Count	Type	Full Name
1	HYP	54	Mod. Amino Acid	4-HYDROXYPROLINE

Biological Unit 2 (1, 54)

No.	Name	Count	Type	Full Name
1	HYP	54	Mod. Amino Acid	4-HYDROXYPROLINE

(no "Site" information available for 1YM8)

(no "SS Bond" information available for 1YM8)

(no "Cis Peptide Bond" information available for 1YM8)

(no "SAP(SNP)/Variant" information available for 1YM8)

(no "PROSITE Motif" information available for 1YM8)

(no "Exon" information available for 1YM8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 A  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Chain B from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 B  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Chain D from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 D  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Chain E from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 E  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Chain F from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 F  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Chain G from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    48        58       
           Q80BK4_SHV2   39 GPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1ym8 G  3 GppGppGppGppGppGppGppGppGpp 29
                             || || |12|| || ||22| || ||
                             || || || || 17-HYP|| || ||
                             4-HYP || || | 19-HYP || ||
                              5-HYP|| || |  20-HYP|| ||
                                7-HYP || |    22-HYP ||
                                 8-HYP|| |     23-HYP||
                                  10-HYP |       25-HYP
                                   11-HYP|        26-HYP
                                     13-HYP         28-HYP
                                      14-HYP         29-HYP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1YM8)

(no "CATH Domain" information available for 1YM8)

(no "Pfam Domain" information available for 1YM8)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E,F,G (Q80BK4_SHV2 | Q80BK4)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	Sites
(no "Sites" information available for 1ym8)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ym8)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	Q80BK4_SHV2 \| Q80BK4	:	1k6f 1wzb 1x1k 2cuo 2d3f 2d3h 3ah9 3ai6 3b0s 3b2c

1g9w	POG10L
1itt	PPG9
1k6f	PPG10
1v4f	POG11L
1v6q	POG11R
1v7h	POG10R

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 108)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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