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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN CTH-383 FROM CLOSTRIDIUM THERMOCELLUM
 
Authors :  W. Tempel, J. Chang, M. Zhao, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, D. Lin, H. Zhang, L. Ljun J. Liu, J. Rose, B. -C. Wang, Southeast Collaboratory For Structur Genomics (Secsg)
Date :  21 Dec 04  (Deposition) - 01 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Conserved Hypothetical Protein, Clostridium Thermocellum, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Tempel, J. Chang, M. Zhao, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee J. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, D. Lin, H. Zhang, L. Ljundahl, Z. -J. Liu, J. Rose, B. -C. Wang
Conserved Hypothetical Protein Cth-383 From Clostridium Thermocellum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Atcc: 27405
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 1515

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2UNX4Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:64 , PRO A:65 , GLU A:66BINDING SITE FOR RESIDUE UNX A 201
2AC2SOFTWAREALA A:82 , GLU A:86 , ARG A:89BINDING SITE FOR RESIDUE UNX A 202
3AC3SOFTWAREGLY B:44BINDING SITE FOR RESIDUE UNX B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YBX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YBX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YBX)

(-) Exons   (0, 0)

(no "Exon" information available for 1YBX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Y2143_CLOTH | A3DHB8 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:91
                                    22        32        42        52        62        72        82        92       102 
          Y2143_CLOTH    13 INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKIT 103
               SCOP domains d1ybxa_ A: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhheeeeee....eeeeee....eeeeee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1ybx A  13 INNLVKQAQKmQRDmERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEmLQDLILAAVNEALRKADEmVTAEISKIT 103
                                    22|   |   32        42        52        62        72  |     82        92 |     102 
                                     23-MSE                                              75-MSE             94-MSE     
                                         27-MSE                                                                        


Chain B from PDB  Type:PROTEIN  Length:92
 aligned with Y2143_CLOTH | A3DHB8 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:92
                                    21        31        41        51        61        71        81        91       101  
          Y2143_CLOTH    12 NINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVTAEISKIT 103
               SCOP domains d1ybxb_ B: automated matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----YbaB_DNA_bd-1ybxB01 B:17-103                                                            Pfam domains (1)
           Pfam domains (2) -----YbaB_DNA_bd-1ybxB02 B:17-103                                                            Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhheeeeee....eeeeee....eeeeee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 1ybx B  12 NINNLVKQAQKmQRDmERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEmLQDLILAAVNEALRKADEmVTAEISKIT 103
                                    21 |   |  31        41        51        61        71   |    81        91  |    101  
                                      23-MSE                                              75-MSE             94-MSE     
                                          27-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YBX)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: YbaB_DNA_bd] (2)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Y2143_CLOTH | A3DHB8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
cellular component
    GO:0043590    bacterial nucleoid    The region of a bacterial cell to which the DNA is confined.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009295    nucleoid    The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

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