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(-) Description

Title :  CRYSTAL STRUCTURE OF LOW TEMPERATURE REQUIREMENT C PROTEIN FROM LISTERIA MONOCYTOGENES
 
Authors :  D. Kumaran, S. Swaminathan, S. K. Burley, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  15 Dec 04  (Deposition) - 28 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Helical Bundle, Tetramer, Putative Pgpa, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, J. B. Bonanno, S. K. Burley, S. Swaminathan
Crystal Structure Of Phosphatidylglycerophosphatase (Pgpase), A Putative Membrane-Bound Lipid Phosphatase, Reveals A Novel Binuclear Metal Binding Site And Two "Proto Wires".
Proteins V. 64 851 2006
PubMed-ID: 16838328  |  Reference-DOI: 10.1002/PROT.21039

(-) Compounds

Molecule 1 - LOW TEMPERATURE REQUIREMENT C PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3MG4Ligand/IonMAGNESIUM ION
4MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:95 , ASP A:98 , GLU A:99 , HOH A:605 , HOH A:611 , HOH A:694BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWARETYR B:95 , ASP B:98 , GLU B:99 , HOH B:827 , HOH B:834 , HOH B:902BINDING SITE FOR RESIDUE CA B 502
3AC3SOFTWARETYR C:95 , ASP C:98 , GLU C:99 , HOH C:620 , HOH C:621 , HOH C:694BINDING SITE FOR RESIDUE CA C 503
4AC4SOFTWARETYR D:95 , ASP D:98 , GLU D:99 , HOH D:612 , HOH D:613 , HOH D:615BINDING SITE FOR RESIDUE CA D 504
5AC5SOFTWAREASP A:98 , THR A:141 , ASP A:144 , ASP A:145 , HOH A:606 , HOH A:695BINDING SITE FOR RESIDUE MG A 601
6AC6SOFTWAREASP B:98 , THR B:141 , ASP B:144 , ASP B:145 , HOH B:823 , HOH B:827BINDING SITE FOR RESIDUE MG B 602
7AC7SOFTWAREASP C:98 , THR C:141 , ASP C:144 , ASP C:145 , HOH C:612BINDING SITE FOR RESIDUE MG C 603
8AC8SOFTWAREASP D:98 , THR D:141 , ASP D:144 , ASP D:145 , HOH D:669 , HOH D:680BINDING SITE FOR RESIDUE MG D 604
9AC9SOFTWAREGLU B:60 , ASN B:63 , ALA B:64 , SER B:104 , LEU C:94 , GLY C:96 , VAL C:97 , ILE C:100 , HOH C:688 , SER D:111BINDING SITE FOR RESIDUE GOL B 817

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y9I)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:82 -Pro A:83
2Gln B:82 -Pro B:83
3Gln C:82 -Pro C:83
4Gln D:82 -Pro D:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y9I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y9I)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y9I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with Q8Y4N7_LISMO | Q8Y4N7 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q8Y4N7_LISMO     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ia_ A: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iA00 A:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i A   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain A from PDB  Type:PROTEIN  Length:159
 aligned with Q9ZIM5_LISMN | Q9ZIM5 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q9ZIM5_LISMN     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ia_ A: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iA00 A:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i A   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with Q8Y4N7_LISMO | Q8Y4N7 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q8Y4N7_LISMO     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ib_ B: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iB00 B:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i B   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with Q9ZIM5_LISMN | Q9ZIM5 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q9ZIM5_LISMN     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ib_ B: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iB00 B:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i B   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain C from PDB  Type:PROTEIN  Length:159
 aligned with Q8Y4N7_LISMO | Q8Y4N7 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q8Y4N7_LISMO     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ic_ C: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iC00 C:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i C   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain C from PDB  Type:PROTEIN  Length:159
 aligned with Q9ZIM5_LISMN | Q9ZIM5 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q9ZIM5_LISMN     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9ic_ C: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iC00 C:6-164 YutG-like                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i C   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain D from PDB  Type:PROTEIN  Length:159
 aligned with Q8Y4N7_LISMO | Q8Y4N7 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q8Y4N7_LISMO     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9id_ D: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iD00 D:6-164 YutG-like                                                                                                                                       CATH domains
           Pfam domains (1) -------PgpA-1y9iD01 D:13-160                                                                                                                               ---- Pfam domains (1)
           Pfam domains (2) -------PgpA-1y9iD02 D:13-160                                                                                                                               ---- Pfam domains (2)
           Pfam domains (3) -------PgpA-1y9iD03 D:13-160                                                                                                                               ---- Pfam domains (3)
           Pfam domains (4) -------PgpA-1y9iD04 D:13-160                                                                                                                               ---- Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i D   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE                                                                                      


Chain D from PDB  Type:PROTEIN  Length:159
 aligned with Q9ZIM5_LISMN | Q9ZIM5 from UniProtKB/TrEMBL  Length:166

    Alignment length:159
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153         
         Q9ZIM5_LISMN     4 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 162
               SCOP domains d1y9id_ D: Low temperature requirement C protein, LtrC                                                                                                          SCOP domains
               CATH domains 1y9iD00 D:6-164 YutG-like                                                                                                                                       CATH domains
           Pfam domains (1) -------PgpA-1y9iD01 D:13-160                                                                                                                               ---- Pfam domains (1)
           Pfam domains (2) -------PgpA-1y9iD02 D:13-160                                                                                                                               ---- Pfam domains (2)
           Pfam domains (3) -------PgpA-1y9iD03 D:13-160                                                                                                                               ---- Pfam domains (3)
           Pfam domains (4) -------PgpA-1y9iD04 D:13-160                                                                                                                               ---- Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9i D   6 KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKREVQNAVLTGIQLDVmAEKGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSYHD 164
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155         
                                                                                               74-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: PgpA] (3)
(-)
Family: PgpA (3)
(-)
Listeria monocytogenes (1)
1aPgpA-1y9iD01D:13-160
1bPgpA-1y9iD02D:13-160
1cPgpA-1y9iD03D:13-160
1dPgpA-1y9iD04D:13-160

(-) Gene Ontology  (4, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q9ZIM5_LISMN | Q9ZIM5)
molecular function
    GO:0008962    phosphatidylglycerophosphatase activity    Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Chain A,B,C,D   (Q8Y4N7_LISMO | Q8Y4N7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008962    phosphatidylglycerophosphatase activity    Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

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 Databases and Analysis Tools

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Access by PDB/NDB ID
  1y9i
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8Y4N7_LISMO | Q8Y4N7
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q9ZIM5_LISMN | Q9ZIM5
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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