1Y9D - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   PYRUVATE OXIDASE VARIANT V265A FROM LACTOBACILLUS PLANTARUM

Authors :   G. Wille, M. Ritter, M. S. Weiss, S. Konig, W. Mantele, G. Hubner

Date :   15 Dec 04 (Deposition) - 05 Apr 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Oxidoreductase, Pyruvate Oxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Wille, M. Ritter, M. S. Weiss, S. Konig, W. Mantele, G. Hubner
The Role Of Val-265 For Flavin Adenine Dinulceotide (Fad) Binding In Pyruvate Oxidase: Ftir, Kinetic And Crystallographic Studies On The Enzyme Variant V265A
Biochemistry V. 44 5086 2005
PubMed-ID: 15794646 | Reference-DOI: 10.1021/BI047337O
(for further references see the PDB file header)

Molecule 1 - PYRUVATE OXIDASE
	Chains	:	A, B, C, D
	EC Number	:	1.2.3.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	C600
	Expression System Taxid	:	562
	Gene	:	POX5
	Mutation	:	YES
	Organism Scientific	:	LACTOBACILLUS PLANTARUM
	Organism Taxid	:	1590
	Synonym	:	PYRUVIC OXIDASE, POX

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 18)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	NA	2	Ligand/Ion	SODIUM ION
4	SO4	4	Ligand/Ion	SULFATE ION
5	TPP	4	Ligand/Ion	THIAMINE DIPHOSPHATE

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:447 , ASN A:474 , GLN A:476 , TPP A:2602	BINDING SITE FOR RESIDUE MG A 2601
02	AC2	SOFTWARE	ILE A:480 , TPP A:2602 , GLY C:34 , GLY C:35 , SER C:36 , SER C:82 , HOH C:2843 , HOH C:2868 , HOH C:2896 , HOH C:2938 , HOH C:2989	BINDING SITE FOR RESIDUE SO4 C 2604
03	AC3	SOFTWARE	MET A:452 , GLN A:455 , HOH A:2858 , MET C:452 , GLN C:455 , HOH C:2859	BINDING SITE FOR RESIDUE NA A 2605
04	AC4	SOFTWARE	ASP B:447 , ASN B:474 , GLN B:476 , TPP B:2702	BINDING SITE FOR RESIDUE MG B 2701
05	AC5	SOFTWARE	ILE B:480 , TPP B:2702 , GLY D:34 , GLY D:35 , SER D:36 , SER D:82 , HOH D:2937 , HOH D:2978 , HOH D:3054 , HOH D:3072	BINDING SITE FOR RESIDUE SO4 D 2704
06	AC6	SOFTWARE	MET B:452 , GLN B:455 , HOH B:2971 , MET D:452 , GLN D:455 , HOH D:2971	BINDING SITE FOR RESIDUE NA B 2705
07	AC7	SOFTWARE	ASP C:447 , ASN C:474 , GLN C:476 , TPP C:2802	BINDING SITE FOR RESIDUE MG C 2801
08	AC8	SOFTWARE	GLY A:34 , GLY A:35 , SER A:36 , SER A:82 , HOH A:2827 , HOH A:2832 , HOH A:2977 , HOH A:3050 , ILE C:480 , TPP C:2802	BINDING SITE FOR RESIDUE SO4 A 2804
09	AC9	SOFTWARE	ASP D:447 , ASN D:474 , GLN D:476 , TPP D:2902 , HOH D:2946	BINDING SITE FOR RESIDUE MG D 2901
10	BC1	SOFTWARE	GLY B:34 , GLY B:35 , SER B:36 , SER B:82 , PHE B:111 , HOH B:2937 , HOH B:2939 , HOH B:3108 , HOH B:3151 , ILE D:480 , TPP D:2902	BINDING SITE FOR RESIDUE SO4 B 2904
11	BC2	SOFTWARE	VAL A:394 , ASP A:396 , ALA A:420 , MET A:422 , GLY A:446 , ASP A:447 , GLY A:448 , GLY A:449 , ASN A:474 , GLN A:476 , TYR A:477 , GLY A:478 , PHE A:479 , ILE A:480 , MG A:2601 , HOH A:2843 , HOH A:2846 , HOH A:2882 , PRO C:33 , GLU C:59 , SER C:82 , PRO C:85 , HIS C:89 , SO4 C:2604 , HOH C:2896	BINDING SITE FOR RESIDUE TPP A 2602
12	BC3	SOFTWARE	GLY A:220 , ILE A:221 , GLY A:222 , THR A:244 , PRO A:246 , GLY A:284 , ASN A:285 , ASN A:286 , ASP A:306 , ILE A:307 , LYS A:311 , ASP A:325 , ALA A:326 , HOH A:2901	BINDING SITE FOR RESIDUE FAD A 2603
13	BC4	SOFTWARE	VAL B:394 , ASP B:396 , ALA B:420 , MET B:422 , ASP B:447 , GLY B:448 , GLY B:449 , ASN B:474 , GLN B:476 , TYR B:477 , GLY B:478 , PHE B:479 , ILE B:480 , MG B:2701 , HOH B:2906 , HOH B:2915 , HOH B:3007 , PRO D:33 , GLU D:59 , SER D:82 , PRO D:85 , HIS D:89 , SO4 D:2704 , HOH D:2978	BINDING SITE FOR RESIDUE TPP B 2702
14	BC5	SOFTWARE	GLY B:220 , ILE B:221 , GLY B:222 , THR B:244 , PRO B:246 , GLY B:284 , ASN B:285 , ASN B:286 , ASP B:306 , ILE B:307 , ASP B:308 , LYS B:311 , ALA B:324 , ASP B:325 , ALA B:326 , HOH B:2953 , HOH B:3059 , HOH B:3379	BINDING SITE FOR RESIDUE FAD B 2703
15	BC6	SOFTWARE	PRO A:33 , GLU A:59 , SER A:82 , PRO A:85 , HIS A:89 , SO4 A:2804 , HOH A:2832 , VAL C:394 , GLY C:395 , ASP C:396 , ALA C:420 , MET C:422 , GLY C:446 , ASP C:447 , GLY C:448 , GLY C:449 , ASN C:474 , GLN C:476 , TYR C:477 , GLY C:478 , PHE C:479 , ILE C:480 , MG C:2801 , HOH C:2848 , HOH C:2854 , HOH C:2855	BINDING SITE FOR RESIDUE TPP C 2802
16	BC7	SOFTWARE	GLY C:220 , ILE C:221 , GLY C:222 , THR C:244 , PRO C:246 , GLY C:284 , ASN C:285 , ASN C:286 , ASP C:306 , ILE C:307 , LYS C:311 , ALA C:324 , ASP C:325 , ALA C:326 , HOH C:2931 , HOH C:3007 , HOH C:3015	BINDING SITE FOR RESIDUE FAD C 2803
17	BC8	SOFTWARE	PRO B:33 , GLU B:59 , SER B:82 , PRO B:85 , HIS B:89 , SO4 B:2904 , HOH B:2937 , VAL D:394 , ASP D:396 , ALA D:420 , MET D:422 , GLY D:446 , ASP D:447 , GLY D:448 , GLY D:449 , ASN D:474 , GLN D:476 , TYR D:477 , GLY D:478 , PHE D:479 , ILE D:480 , MG D:2901 , HOH D:2907 , HOH D:2946 , HOH D:2947 , HOH D:2976	BINDING SITE FOR RESIDUE TPP D 2902
18	BC9	SOFTWARE	GLY D:220 , ILE D:221 , GLY D:222 , THR D:244 , PRO D:246 , GLY D:284 , ASN D:285 , ASN D:286 , ASP D:306 , ILE D:307 , ASP D:308 , LYS D:311 , ALA D:324 , ASP D:325 , ALA D:326 , HOH D:3020	BINDING SITE FOR RESIDUE FAD D 2903

(no "SS Bond" information available for 1Y9D)

(no "Cis Peptide Bond" information available for 1Y9D)

(no "SAP(SNP)/Variant" information available for 1Y9D)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TPP_ENZYMES	PS00187	Thiamine pyrophosphate enzymes signature.	POXB_LACPL	430-449	4	A:430-449 B:430-449 C:430-449 D:430-449

(no "Exon" information available for 1Y9D)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:558
 aligned with POXB_LACPL | P37063 from UniProtKB/Swiss-Prot  Length:603

    Alignment length:585
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
           POXB_LACPL     9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSATSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
               SCOP domains d1y9da1 A:9-182 automated matches                                                                                                                                                      d1y9da2 A:192-365 Pyruvate oxidase                                                                                                                                            d1y9da3 A:366-593 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains 1y9dA01 A:9-192  [code=3.40.50.970, no name defined]                                                                                                                                    1y9dA02 A:193-359 TPP-binding domain                                                                                                                                   1y9dA03 A:360-549  [code=3.40.50.970, no name defined]                                                                                                                                        -------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhh...eeee..hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.....-------...hhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.hhhh.eee.hhh---------......hhhhhhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhhh..eee..............eeee.....hhhhhhhhhhh.eeeee...-----------...eeeeee.hhhhh.......eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....eeee..hhhhhhhhhhh......eee.........hhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhhhhhhhh............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh....eeeeee...................hhhhhhhhhhhhh.....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9d A   9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTG-------EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDW---------PLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNN-----------NTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
                                    18        28        38        48        58        68        78        88        98       108      |  -    |  128       138       148       158       168       178   |     -   |   198       208       218       228       238       248       258       268       278       | -       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
                                                                                                                                    115     123                                                        182       192                                                                                           286         298

Chain B from PDB  Type:PROTEIN  Length:572
 aligned with POXB_LACPL | P37063 from UniProtKB/Swiss-Prot  Length:603

    Alignment length:589
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588         
           POXB_LACPL     9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSATSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQHQ 597
               SCOP domains d1y9db1 B:9-182 automated matches                                                                                                                                             d      1y9db2 B:183-365 Pyruvate oxidase                                                                                                                                               d1y9db3 B:366-597 automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains 1y9dB01 B:9-192  [code=3.40.50.970, no name defined]                                                                                                                                    1y9dB02 B:193-359 TPP-binding domain                                                                                                                                   1y9dB03 B:360-549  [code=3.40.50.970, no name defined]                                                                                                                                        ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee......-----....hhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.hhhh.ee......------........hhhhhhhhhhhhhhh..eeeee.hhhh.hhhhhhhhhhhhh..eee..............eeee.....hhhhhhhhhhh.eeeee.....------......eeeeee.hhhhh.......eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....eeee..hhhhhhhhhhh......eee.........hhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhhhhhhhh............hhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhh....eeeeee...................hhhhhhhhhhhh......hhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9d B   9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGM-----QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWY------QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNYP------AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQHQ 597
                                    18        28        38        48        58        68        78        88        98       108       | -   |   128       138       148       158       168       178    |    - |     198       208       218       228       238       248       258       268       278       288      |298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588         
                                                                                                                                     116   122                                                          183    190                                                                                               288    295

Chain C from PDB  Type:PROTEIN  Length:556
 aligned with POXB_LACPL | P37063 from UniProtKB/Swiss-Prot  Length:603

    Alignment length:585
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
           POXB_LACPL     9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSATSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
               SCOP domains d1y9dc1 C:9-180 automated matches                                                                                                                                                        d1y9dc2 C:194-365 Pyruvate oxidase                                                                                                                                          d1y9dc3 C:366-593 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains 1y9dC01 C:9-180  [code=3.40.50.970, no name defined]                                                                                                                                     1y9dC02 C:194-359 TPP-binding domain                                                                                                                                  1y9dC03 C:360-549  [code=3.40.50.970, no name defined]                                                                                                                                        -------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.....-------...hhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.hhhh.eee..-------------....hhhhhhhhhhhhhh...eeeee.hhhh.hhhhhhhhhhhh...eee..............eeee.....hhhhhhhhh...eeeee....---------....eeeeee.hhhhh.......eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....eeee..hhhhhhhhhhh......eee.........hhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhhh...eeeeee...hhhhhhhhhhhh............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh....eeeeee...................hhhhhhhhhhhh......hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9d C   9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTG-------EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAE-------------LPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNY---------KNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
                                    18        28        38        48        58        68        78        88        98       108      |  -    |  128       138       148       158       168       178 |       -     | 198       208       218       228       238       248       258       268       278        |-       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
                                                                                                                                    115     123                                                      180           194                                                                                          287       297

Chain D from PDB  Type:PROTEIN  Length:560
 aligned with POXB_LACPL | P37063 from UniProtKB/Swiss-Prot  Length:603

    Alignment length:585
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
           POXB_LACPL     9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSATSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
               SCOP domains d1y9dd1 D:9-182 automated matches                                                                                                                                             d1y9        dd2 D:183-365 Pyruvate oxidase                                                                                                                                             d1y9dd3 D:366-593 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains 1y9dD01 D:9-186  [code=3.40.50.970, no name defined]                                                                                                                                      1y9dD02 D:195-359 TPP-binding domain                                                                                                                                 1y9dD03 D:360-549  [code=3.40.50.970, no name defined]                                                                                                                                        -------------------------------------------- CATH domains
           Pfam domains (1) --TPP_enzyme_N-1y9dD09 D:11-181                                                                                                                                              -----        -------TPP_enzyme_M-1y9dD01 D:202-333                                                                                                      -----------------------------------------------------------TPP_enzyme_C-1y9dD05 D:393-542                                                                                                                        --------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --TPP_enzyme_N-1y9dD10 D:11-181                                                                                                                                              -----        -------TPP_enzyme_M-1y9dD02 D:202-333                                                                                                      -----------------------------------------------------------TPP_enzyme_C-1y9dD06 D:393-542                                                                                                                        --------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --TPP_enzyme_N-1y9dD11 D:11-181                                                                                                                                              -----        -------TPP_enzyme_M-1y9dD03 D:202-333                                                                                                      -----------------------------------------------------------TPP_enzyme_C-1y9dD07 D:393-542                                                                                                                        --------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --TPP_enzyme_N-1y9dD12 D:11-181                                                                                                                                              -----        -------TPP_enzyme_M-1y9dD04 D:202-333                                                                                                      -----------------------------------------------------------TPP_enzyme_C-1y9dD08 D:393-542                                                                                                                        --------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eeehhhhhhhhhhhh...eeee..hhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeeeee.....-------...hhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh.eeeeeee.hhhh.eee........--------...hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhh...eee..............eeee.....hhhhhhhhhhh.eeeee....----------...eeeeee.hhhhh.......eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh....eeee..hhhhhhhhhhh......eee.........hhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhhhhhhhh............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh....eeeeee...................hhhhhhhhhhhh......hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9d D   9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTG-------EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASA--------PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNY----------NTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDD 593
                                    18        28        38        48        58        68        78        88        98       108      |  -    |  128       138       148       158       168       178       | -      |198       208       218       228       238       248       258       268       278        |-       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588     
                                                                                                                                    115     123                                                            186      195                                                                                         287        298

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: DHS-like NAD/FAD-binding domain (176)

Superfamily: DHS-like NAD/FAD-binding domain (176)

Family: Pyruvate oxidase and decarboxylase, middle domain (74)

Protein domain: Pyruvate oxidase (10)

Lactobacillus plantarum [TaxId: 1590] (8)

1a	d1y9da2	A:192-365
1b	d1y9db2	B:183-365
1c	d1y9dc2	C:194-365
1d	d1y9dd2	D:183-365

Fold: Thiamin diphosphate-binding fold (THDP-binding) (289)

Superfamily: Thiamin diphosphate-binding fold (THDP-binding) (289)

Family: automated matches (65)

Protein domain: automated matches (65)

Lactobacillus plantarum [TaxId: 1590] (6)

2a	d1y9da1	A:9-182
2b	d1y9da3	A:366-593
2c	d1y9db1	B:9-182
2d	d1y9db3	B:366-597
2e	d1y9dc1	C:9-180
2f	d1y9dc3	C:366-593
2g	d1y9dd1	D:9-182
2h	d1y9dd3	D:366-593

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.970, no name defined] (144)

Lactobacillus plantarum. Organism_taxid: 1590. (6)

1a	1y9dA03	A:360-549
1b	1y9dB03	B:360-549
1c	1y9dC03	C:360-549
1d	1y9dD03	D:360-549
1e	1y9dB01	B:9-192
1f	1y9dD01	D:9-186
1g	1y9dA01	A:9-192
1h	1y9dC01	C:9-180

Homologous Superfamily: TPP-binding domain (120)

Lactobacillus plantarum. Organism_taxid: 1590. (6)

2a	1y9dB02	B:193-359
2b	1y9dC02	C:194-359
2c	1y9dA02	A:193-359
2d	1y9dD02	D:195-359

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: FAD_DHS (82)

Family: TPP_enzyme_M (50)

Lactobacillus plantarum (3)

1a	TPP_enzyme_M-1y9dD01	D:202-333
1b	TPP_enzyme_M-1y9dD02	D:202-333
1c	TPP_enzyme_M-1y9dD03	D:202-333
1d	TPP_enzyme_M-1y9dD04	D:202-333

Clan: THDP-binding (106)

Family: TPP_enzyme_C (54)

Lactobacillus plantarum (3)

2a	TPP_enzyme_C-1y9dD05	D:393-542
2b	TPP_enzyme_C-1y9dD06	D:393-542
2c	TPP_enzyme_C-1y9dD07	D:393-542
2d	TPP_enzyme_C-1y9dD08	D:393-542

Family: TPP_enzyme_N (54)

Lactobacillus plantarum (3)

3a	TPP_enzyme_N-1y9dD09	D:11-181
3b	TPP_enzyme_N-1y9dD10	D:11-181
3c	TPP_enzyme_N-1y9dD11	D:11-181
3d	TPP_enzyme_N-1y9dD12	D:11-181

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (POXB_LACPL | P37063)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0047112	pyruvate oxidase activity	Catalysis of the reaction: H(+) + O(2) + phosphate + pyruvate = acetyl phosphate + CO(2) + H(2)O(2).
	GO:0030976	thiamine pyrophosphate binding	Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	1y9d
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	POXB_LACPL \| P37063
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	1.2.3.3
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	POXB_LACPL \| P37063
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UniProtKB/Swiss-Prot
	POXB_LACPL \| P37063	:	1pow 1pox 2ez4 2ez8 2ez9 2ezt 2ezu

1pow	WILDTYPE PYRUVATE OXIDASE
1pox	STABILIZED TRIPLE MUTANT OF PYRUVATE OXIDASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 12)

CATH Domains (2, 12)

Pfam Domains (3, 12)

Gene Ontology (7, 7)

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