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(-) Description

Title :  STRUCTURE OF GENE PRODUCT AF1437 FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  M. E. Cuff, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Cen Structural Genomics (Mcsg)
Date :  10 Dec 04  (Deposition) - 25 Jan 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Archaeoglobus Fulgidus, Structural Genomics, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Structure Of Gene Product Af1437 From Archaeoglobus Fulgidu
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF1437
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF1437
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:5 , GLU A:7 , ASP A:207 , HOH A:503 , HOH A:508 , HOH A:514BINDING SITE FOR RESIDUE MG A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y8A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y8A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y8A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y8A)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y8A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
 aligned with O28835_ARCFU | O28835 from UniProtKB/TrEMBL  Length:308

    Alignment length:313
                               1                                                                                                                                                                                                                                                                                                                308  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307|  
         O28835_ARCFU     - ---MFFTDWEGPWILTDFALELCMAVFNNARFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFLAAAGVKNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAFNGNEYALKHADVAIISPTAMSEAKVIELFMERKERAFEVLSAVSIPETEIYIMENSDFGEVLEKSKRMRVRLRGLAGELG--   -
               SCOP domains ---d1y8aa1 A:1-308 Hypothetical protein AF1437                                                                                                                                                                                                                                                                         -- SCOP domains
               CATH domains 1y8aA01         -------------------------------------------------------------------1y8aA01 A:-2-13,A:81-133,A:183-280                   -------------------------------------------------1y8aA01 A:-2-13,A:81-133,A:183-280  [code=3.40.50.1000, no name defined]                          ------------------------------ CATH domains
               Pfam domains ----HAD-1y8aA01 A:2-216                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhh..eeeeeeeeehhhhhhhhhhh....eeeee..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhh..eeeee..hhhhhh...eeee...hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y8a A  -2 QGHMFFTDWEGPWILTDFALELCMAVFNNARFFSNLSEYDDYLAYEVRREGYEAGYTLKLLTPFLAAAGVKNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAFNGNEYALKHADVVIISPTAMSEAKVIELFMERKERAFEVLSAVSIPETEIYIMENSDFGEVLEKSKRMRVRLRGLAGELGGS 310
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O28835_ARCFU | O28835)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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