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(-) Description

Title :  CRYSTAL STRUCTURE OF ACYL-COA HYDROLASE FROM BACILLUS CEREUS
 
Authors :  Y. Kim, H. Li, F. Collart, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)
Date :  10 Dec 04  (Deposition) - 25 Jan 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Acyl-Coa Hydrolase, Structural Genomics, Coenzyme A, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, H. Li, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Acyl-Coa Hydrolase From Bacillus Cereu
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACYL-COA HYDROLASE
    Chains: A, B, C
    EC Number: 3.1.2.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric Unit (4, 19)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2COA3Ligand/IonCOENZYME A
3MSE12Mod. Amino AcidSELENOMETHIONINE
4SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 36)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2COA6Ligand/IonCOENZYME A
3MSE24Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:11 , ALA A:12 , ASN A:13 , ASP A:137 , GLU A:141BINDING SITE FOR RESIDUE CA A 205
2AC2SOFTWAREARG B:74 , ARG B:110BINDING SITE FOR RESIDUE SO4 B 206
3AC3SOFTWAREPRO A:72 , ARG A:74 , ARG A:110BINDING SITE FOR RESIDUE SO4 A 207
4AC4SOFTWAREPRO C:72 , ARG C:74 , ARG C:110 , HOH C:211BINDING SITE FOR RESIDUE SO4 C 208
5AC5SOFTWAREVAL A:60 , THR A:61 , ALA A:62 , SER A:63 , GLY A:89 , ARG A:90 , THR A:91 , SER A:92 , THR A:118 , VAL A:120 , PRO A:128 , ARG A:155 , LYS A:159 , HOH A:228 , THR C:33 , LEU C:34 , ASP C:68 , PHE C:69 , LEU C:70 , HIS C:71 , PRO C:72 , VAL C:73 , HOH C:243 , HOH C:244BINDING SITE FOR RESIDUE COA A 201
6AC6SOFTWARETHR B:33 , LEU B:34 , ILE B:39 , VAL B:60 , THR B:61 , ALA B:62 , SER B:63 , ASP B:68 , PHE B:69 , HIS B:71 , VAL B:73 , GLY B:89 , ARG B:90 , THR B:91 , SER B:92 , THR B:118 , VAL B:120 , PRO B:128 , ARG B:155 , LYS B:159 , HOH B:216 , HOH B:224 , HOH B:233BINDING SITE FOR RESIDUE COA B 202
7AC7SOFTWARETHR A:33 , LEU A:34 , ILE A:39 , ASP A:68 , PHE A:69 , HIS A:71 , VAL A:73 , VAL C:60 , THR C:61 , SER C:63 , GLY C:89 , ARG C:90 , THR C:91 , SER C:92 , THR C:118 , VAL C:120 , PRO C:128 , ARG C:155 , LYS C:159 , HOH C:230BINDING SITE FOR RESIDUE COA C 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y7U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y7U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y7U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y7U)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y7U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Q81EE4_BACCR | Q81EE4 from UniProtKB/TrEMBL  Length:171

    Alignment length:164
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    
         Q81EE4_BACCR     8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
               SCOP domains d1y7ua1 A:8-171 Acyl-coa hydrolase BC2038                                                                                                                            SCOP domains
               CATH domains 1y7uA00 A:8-171  [code=3.10.129.10, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhheeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.eeeeeee.............eeeeeeeeeee...eeeeeeeeeee......eeeeeeeeeeeeee..........eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7u A   8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEmDmVASISASRHSRKECVTASmDWVDFLHPVRSSDCVSYESFVIWTGRTSmEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
                                    17        27        37     | |47        57      | 67        77        87     |  97       107       117       127       137       147       157       167    
                                                              43-MSE               64-MSE                       93-MSE                                                                          
                                                                45-MSE                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:164
 aligned with Q81EE4_BACCR | Q81EE4 from UniProtKB/TrEMBL  Length:171

    Alignment length:164
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    
         Q81EE4_BACCR     8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
               SCOP domains d1y7ub_ B: automated matches                                                                                                                                         SCOP domains
               CATH domains 1y7uB00 B:8-171  [code=3.10.129.10, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhheeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeeeeeeeeee...eeeeeeeeeeee.....eeeeeeeeeeeee...........eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7u B   8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEmDmVASISASRHSRKECVTASmDWVDFLHPVRSSDCVSYESFVIWTGRTSmEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
                                    17        27        37     | |47        57      | 67        77        87     |  97       107       117       127       137       147       157       167    
                                                              43-MSE               64-MSE                       93-MSE                                                                          
                                                                45-MSE                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q81EE4_BACCR | Q81EE4 from UniProtKB/TrEMBL  Length:171

    Alignment length:164
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    
         Q81EE4_BACCR     8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHPVRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
               SCOP domains d1y7uc_ C: automated matches                                                                                                                                         SCOP domains
               CATH domains 1y7uC00 C:8-171  [code=3.10.129.10, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhheeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeeeeeeeeee...eeeeeeeeeeee.....eeeeeeeeeeeee...........eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7u C   8 KGKTANESRVFKTSRVFPTDLNDHNTLFGGKILSEmDmVASISASRHSRKECVTASmDWVDFLHPVRSSDCVSYESFVIWTGRTSmEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRKAESKKVATLLTF 171
                                    17        27        37     | |47        57      | 67        77        87     |  97       107       117       127       137       147       157       167    
                                                              43-MSE               64-MSE                       93-MSE                                                                          
                                                                45-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Y7U)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q81EE4_BACCR | Q81EE4)
molecular function
    GO:0047617    acyl-CoA hydrolase activity    Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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