1Y63 - JenaLib

Title :   INITIAL CRYSTAL STRUCTURAL ANALYSIS OF A PROBABLE KINASE FROM LEISHMANIA MAJOR FRIEDLIN

Authors :   M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Proto Consortium (Sgpp)

Date :   03 Dec 04 (Deposition) - 04 Jan 05 (Release) - 28 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Protein Structure Initiative, Psi, Sgpp, Structural Genomics Of Pathogenic Protozoa Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp
Crystal Structural Analysis Of A Probable Kinase From Leishmania Major Friedlin
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 16)

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:24 , ADP A:301 , HOH A:1005 , HOH A:1008 , HOH A:1013 , HOH A:1014	BINDING SITE FOR RESIDUE MN A 302
02	AC2	SOFTWARE	GLU A:28 , HIS A:39 , HOH A:1026 , HOH A:1030 , HOH A:1031 , HOH A:1038	BINDING SITE FOR RESIDUE MN A 311
03	AC3	SOFTWARE	ASP A:70 , ASP A:150 , HOH A:1087 , HOH A:1111 , HOH A:1132 , HOH A:1137	BINDING SITE FOR RESIDUE MN A 351
04	AC4	SOFTWARE	GLU A:125 , HOH A:1054 , HOH A:1080 , HOH A:1117 , HOH A:1130	BINDING SITE FOR RESIDUE MN A 352
05	AC5	SOFTWARE	GLU A:98 , ALA A:147 , HOH A:1002 , HOH A:1033 , HOH A:1034 , HOH A:1043	BINDING SITE FOR RESIDUE MN A 353
06	AC6	SOFTWARE	GLN A:38 , SER A:82 , ARG A:83 , HIS A:86	BINDING SITE FOR RESIDUE MN A 354
07	AC7	SOFTWARE	ASN A:131	BINDING SITE FOR RESIDUE MN A 355
08	AC8	SOFTWARE	ILE A:64 , TYR A:90 , HIS A:91	BINDING SITE FOR RESIDUE MN A 356
09	AC9	SOFTWARE	TYR A:90 , HIS A:91 , HOH A:1001	BINDING SITE FOR RESIDUE BR A 401
10	BC1	SOFTWARE	LEU A:161	BINDING SITE FOR RESIDUE BR A 402
11	BC2	SOFTWARE	ASP A:35 , HOH A:1082 , HOH A:1089	BINDING SITE FOR RESIDUE BR A 403
12	BC3	SOFTWARE	GLU A:41	BINDING SITE FOR RESIDUE BR A 404
13	BC4	SOFTWARE	TYR A:123 , ARG A:128 , ASN A:131	BINDING SITE FOR RESIDUE BR A 405
14	BC5	SOFTWARE	GLU A:94 , HOH A:1107 , HOH A:1157	BINDING SITE FOR RESIDUE NA A 501
15	BC6	SOFTWARE	ASP A:146 , HOH A:1088	BINDING SITE FOR RESIDUE NA A 502
16	BC7	SOFTWARE	GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , THR A:24 , SER A:25 , PHE A:115 , ARG A:117 , THR A:119 , ARG A:128 , ASN A:158 , ASP A:159 , THR A:160 , LEU A:161 , MET A:164 , MN A:302 , HOH A:1005 , HOH A:1008 , HOH A:1013 , HOH A:1029 , HOH A:1032 , HOH A:1037	BINDING SITE FOR RESIDUE ADP A 301

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:168
 aligned with Q4Q7A6_LEIMA | Q4Q7A6 from UniProtKB/TrEMBL  Length:180

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
         Q4Q7A6_LEIMA     2 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 175
               SCOP domains d1y63a_ A: Probable kinase LmjF30.1890                                                                                                                                         SCOP domains
               CATH domains 1y63A00 A:6-179 P-loop containing nucleotide trip      hosphate hydrolases                                                                                                     CATH domains
               Pfam domains -------AAA_18-1y63A01 A:13-137                                                                                                      ------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.....hhhhhhhhhhhhh..eeeeehhhhhhhh.....------....hhhhhhhhhhhhhhhhh...eeeee.......hhhhh.eeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y63 A   6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTE------THIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 179
                                    15        25        35        45        |-     |  65        75        85        95       105       115       125       135       145       155       165       175    
                                                                           54     61

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q4Q7A6_LEIMA | Q4Q7A6)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0004017	adenylate kinase activity	Catalysis of the reaction: ATP + AMP = 2 ADP.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046939	nucleotide phosphorylation	The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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