1Y3I - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NAD KINASE-NAD COMPLEX

Authors :   S. Mori, M. Yamasaki, Y. Maruyama, K. Momma, S. Kawai, W. Hashimoto, B. M K. Murata

Date :   25 Nov 04 (Deposition) - 18 Jan 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A,B  (1x)

Keywords :   Nad Kinase, Polyphosphate, Nad, Mycobacterium Tuberculosis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Mori, M. Yamasaki, Y. Maruyama, K. Momma, S. Kawai, W. Hashimoto, B. Mikami, K. Murata
Nad-Binding Mode And The Significance Of Intersubunit Contact Revealed By The Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase-Nad Complex
Biochem. Biophys. Res. Commun. V. 327 500 2005
PubMed-ID: 15629142 | Reference-DOI: 10.1016/J.BBRC.2004.11.163

Molecule 1 - INORGANIC POLYPHOSPHATE/ATP-NAD KINASE
	Chains	:	A, B
	EC Number	:	2.7.1.23
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PSK27
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PPNK
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Synonym	:	POLY(P)/ATP NAD KINASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 14)

No.	Name	Count	Type	Full Name
1	GOL	8	Ligand/Ion	GLYCEROL
2	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU B:228 , PHE B:229 , GLY B:230 , ARG B:231	BINDING SITE FOR RESIDUE SO4 B 701
2	AC2	SOFTWARE	ASP A:85 , GLY A:86 , LEU A:89 , ARG A:109 , ILE A:110 , PHE A:112 , LEU A:113 , ASN A:159 , GLU A:160 , VAL A:171 , ASP A:189 , THR A:197 , THR A:200 , ALA A:201 , TYR A:202 , SER A:205 , ASN A:224 , HOH A:619	BINDING SITE FOR RESIDUE NAD A 501
3	AC3	SOFTWARE	ASP B:85 , GLY B:86 , LEU B:89 , ARG B:109 , PHE B:112 , LEU B:113 , ASN B:159 , GLU B:160 , GLY B:170 , VAL B:171 , ASP B:189 , GLY B:198 , THR B:200 , ALA B:201 , TYR B:202 , SER B:205 , ASN B:224 , ASP B:257 , GLY B:258	BINDING SITE FOR RESIDUE NAD B 1501
4	AC4	SOFTWARE	HOH A:613	BINDING SITE FOR RESIDUE GOL A 601
5	AC5	SOFTWARE	HIS A:226 , ALA A:227 , LEU A:228 , LYS A:296 , PHE A:297	BINDING SITE FOR RESIDUE GOL A 602
6	AC6	SOFTWARE	GLY A:207 , HOH A:620 , ARG B:231	BINDING SITE FOR RESIDUE GOL B 603
7	AC7	SOFTWARE	HIS B:226 , ALA B:227 , LEU B:228 , PHE B:297 , ARG B:298	BINDING SITE FOR RESIDUE GOL B 1601

(no "SS Bond" information available for 1Y3I)

(no "Cis Peptide Bond" information available for 1Y3I)

(no "SAP(SNP)/Variant" information available for 1Y3I)

(no "PROSITE Motif" information available for 1Y3I)

(no "Exon" information available for 1Y3I)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:231
 aligned with NADK_MYCTO | P9WHV6 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
           NADK_MYCTO     7 VLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
               SCOP domains d1y3ia                                                                 _ A: Inorganic polyphosphate/ATP-NAD kinase PpnK                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------1y3iA02 A:140-276 Probable inorganic polyphosphate/atp-NAD kinase; domain 2                                                              -------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.-----------------------------------------------------------------.eeeeehhhhhhhhhhhhhhh......ee.............hhhhhhhhhhh......eeeeeeeeee....eeeeeee..eeeee.......eeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhh...ee......eeeeeeee.......eee....eeeeee......eeeee..eeeeee....eeeeeeeeeeee.......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y3i A   7 VLLVVH-----------------------------------------------------------------LVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
                                 |   -         -         -         -         -         -         - |      86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                12                                                                78

Chain A from PDB  Type:PROTEIN  Length:231
 aligned with NADK_MYCTU | P9WHV7 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
           NADK_MYCTU     7 VLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
               SCOP domains d1y3ia                                                                 _ A: Inorganic polyphosphate/ATP-NAD kinase PpnK                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------1y3iA02 A:140-276 Probable inorganic polyphosphate/atp-NAD kinase; domain 2                                                              -------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.-----------------------------------------------------------------.eeeeehhhhhhhhhhhhhhh......ee.............hhhhhhhhhhh......eeeeeeeeee....eeeeeee..eeeee.......eeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhh...ee......eeeeeeee.......eee....eeeeee......eeeee..eeeeee....eeeeeeeeeeee.......hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y3i A   7 VLLVVH-----------------------------------------------------------------LVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
                                 |   -         -         -         -         -         -         - |      86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                12                                                                78

Chain B from PDB  Type:PROTEIN  Length:231
 aligned with NADK_MYCTO | P9WHV6 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
           NADK_MYCTO     7 VLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
               SCOP domains d1y3ib                                                                 _ B: Inorganic polyphosphate/ATP-NAD kinase PpnK                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------1y3iB02 B:140-276 Probable inorganic polyphosphate/atp-NAD kinase; domain 2                                                              -------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.-----------------------------------------------------------------.eeeeehhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhh...eeee..eeeeeee..eeeeeeee..eeeee.......eeeeeee..eeeeeeeeeeeeee.hhhh.hhhhhh...ee......eeeeeeeee......eee.....eeeee......eeeee..eeeeee....eeeeee....eeee.....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y3i B   7 VLLVVH-----------------------------------------------------------------LVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
                                 |   -         -         -         -         -         -         - |      86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                12                                                                78

Chain B from PDB  Type:PROTEIN  Length:231
 aligned with NADK_MYCTU | P9WHV7 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
           NADK_MYCTU     7 VLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
               SCOP domains d1y3ib                                                                 _ B: Inorganic polyphosphate/ATP-NAD kinase PpnK                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------1y3iB02 B:140-276 Probable inorganic polyphosphate/atp-NAD kinase; domain 2                                                              -------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.-----------------------------------------------------------------.eeeeehhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhh...eeee..eeeeeee..eeeeeeee..eeeee.......eeeeeee..eeeeeeeeeeeeee.hhhh.hhhhhh...ee......eeeeeeeee......eee.....eeeee......eeeee..eeeeee....eeeeee....eeee.....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y3i B   7 VLLVVH-----------------------------------------------------------------LVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVT 302
                                 |   -         -         -         -         -         -         - |      86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                12                                                                78

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: NAD kinase/diacylglycerol kinase-like (15)

Superfamily: NAD kinase/diacylglycerol kinase-like (15)

Family: NAD kinase-like (8)

Protein domain: Inorganic polyphosphate/ATP-NAD kinase PpnK (8)

Mycobacterium tuberculosis [TaxId: 1773] (4)

1a	d1y3ia_	A:
1b	d1y3ib_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Tumour Suppressor Smad4 (52)

Homologous Superfamily: Probable inorganic polyphosphate/atp-NAD kinase; domain 2 (9)

Mycobacterium tuberculosis. Organism_taxid: 1773. (4)

1a	1y3iA02	A:140-276
1b	1y3iB02	B:140-276

(no "Pfam Domain" information available for 1Y3I)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NADK_MYCTU | P9WHV7)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0003951	NAD+ kinase activity	Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0019674	NAD metabolic process	The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
	GO:0006741	NADP biosynthetic process	The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH.
	GO:0040007	growth	The increase in size or mass of an entire organism, a part of an organism or a cell.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006797	polyphosphate metabolic process	The chemical reactions and pathways involving a polyphosphate, the anion or salt of polyphosphoric acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B (NADK_MYCTO | P9WHV6)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003951	NAD+ kinase activity	Catalysis of the reaction: ATP + NAD(+) = ADP + 2 H(+) + NADP(+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0019674	NAD metabolic process	The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
	GO:0006741	NADP biosynthetic process	The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1y3i)

Biological Units
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	1y3i
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	NADK_MYCTO \| P9WHV6
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	NADK_MYCTU \| P9WHV7
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	2.7.1.23
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	NADK_MYCTO \| P9WHV6
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UniProtKB/Swiss-Prot
	NADK_MYCTO \| P9WHV6	:	1u0r 1u0t 1y3h
	NADK_MYCTU \| P9WHV7	:	1u0r 1u0t 1y3h

1y3h	THE SAME PROTEIN AT 2.8 ANGSTROM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (14, 25)

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