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(-) Description

Title :  STRUCTURE OF RV0793 FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  M. J. Lemieux, C. Ference, M. M. Cherney, M. Wang, C. Garen, M. N. James, T Structural Genomics Consortium (Tbsgc)
Date :  15 Nov 04  (Deposition) - 28 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ferredoxin-Like Fold, Alpha+Beta Sandwich With Antiparallel Beta- Sheet, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Lemieux, C. Ference, M. M. Cherney, M. Wang, C. Garen, M. N. James
The Crystal Structure Of Rv0793, A Hypothetical Monooxygenase From M. Tuberculosis
J. Struct. Funct. Genom. V. 6 245 2005
PubMed-ID: 16496224  |  Reference-DOI: 10.1007/S10969-005-9004-6

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN RV0793
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST15
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: GATEWAY PLASMID (INVITROGEN)
    Gene: RV0793
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:29 , TYR A:42 , LEU A:55 , GLU A:57 , HIS A:68 , TYR A:77 , ACT A:303 , HOH A:338BINDING SITE FOR RESIDUE ACT A 301
2AC2SOFTWAREMET B:29 , TYR B:42 , LEU B:55 , GLU B:57 , HIS B:68 , TYR B:77 , HOH B:324BINDING SITE FOR RESIDUE ACT B 302
3AC3SOFTWARETYR A:74 , TYR A:77 , ARG A:78 , VAL A:91 , ACT A:301 , HOH A:372BINDING SITE FOR RESIDUE ACT A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y0H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y0H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y0H)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ABMPS51725 ABM domain profile.Y0793_MYCTU5-93
 		  2A:6-94
B:6-94

(-) Exons   (0, 0)

(no "Exon" information available for 1Y0H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:101
 aligned with Y0793_MYCTU | O86332 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:101
                             1                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99 
          Y0793_MYCTU     - -MTSPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEAS 100
               SCOP domains d1y0ha_ A: Hypothetical protein Rv0793                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....eeeeeee.hhhhhhhhhhhhhhhhhhh.hhhhh....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----ABM  PDB: A:6-94 UniProt: 5-93                                                           ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 1y0h A   1 GMTSPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEAS 101
                                    10        20        30        40        50        60        70        80        90       100 


Chain B from PDB  Type:PROTEIN  Length:98
 aligned with Y0793_MYCTU | O86332 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:98
                                    12        22        32        42        52        62        72        82        92        
          Y0793_MYCTU     3 SPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEAS 100
               SCOP domains d1y0hb_ B: Hypothetical protein Rv0793                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --ABM  PDB: B:6-94 UniProt: 5-93                                                           ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1y0h B   4 SPVAVIARFMPRPDARSALRALLDAMITPTRAEDGCRSYDLYESADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAPLDEAS 101
                                    13        23        33        43        53        63        73        83        93
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Y0H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Y0H)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Y0793_MYCTU | O86332)
molecular function
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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