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(-) Description

Title :  DAPTOMYCIN NMR STRUCTURE
 
Authors :  L. -J. Ball, C. M. Goult, J. A. Donarski, J. Micklefield, V. Ramesh
Date :  21 Oct 04  (Deposition) - 16 Nov 04  (Release) - 27 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
NMR Structure *:  A  (1x)
Keywords :  Daptomycin, Cubicin, Antibiotic, Lipopeptide, Calcium-Dependent (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. -J. Ball, C. M. Goult, J. A. Donarski, J. Micklefield, V. Ramesh
Nmr Structure Determination And Calcium Binding Effects Of Lipopeptide Antibiotic Daptomycin
Org. Biomol. Chem. V. 2 1872 2004
PubMed-ID: 15227539  |  Reference-DOI: 10.1039/B402722A

(-) Compounds

Molecule 1 - DAPTOMYCIN
    Chains: A
    Engineered: YES
    Organism Scientific: STREPTOMYCES ROSEOSPORUS
    Organism Taxid: 67294
    Synonym: A21978C, CUBICIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure : A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 7)

NMR Structure (7, 7)
No.NameCountTypeFull Name
1DAL1Mod. Amino AcidD-ALANINE
2DKA1Ligand/IonDECANOIC ACID
3DSG1Mod. Amino AcidD-ASPARAGINE
4DSN1Mod. Amino AcidD-SERINE
5KYN1Mod. Amino Acid(2S)-2-AMINO-4-(2-AMINOPHENYL)-4-OXOBUTANOIC ACID
6LME1Mod. Amino Acid(2S,3R)-2-AZANYL-3-METHYL-PENTANEDIOIC ACID
7ORN1Mod. Amino AcidL-ORNITHINE
NMR Structure * (7, 7)
No.NameCountTypeFull Name
1DAL1Mod. Amino AcidD-ALANINE
2DKA1Ligand/IonDECANOIC ACID
3DSG1Mod. Amino AcidD-ASPARAGINE
4DSN1Mod. Amino AcidD-SERINE
5KYN1Mod. Amino Acid(2S)-2-AMINO-4-(2-AMINOPHENYL)-4-OXOBUTANOIC ACID
6LME1Mod. Amino Acid(2S,3R)-2-AZANYL-3-METHYL-PENTANEDIOIC ACID
7ORN1Mod. Amino AcidL-ORNITHINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XT7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1xt7 A  2 WxDTGxDxDGxxx 14
                             |   | |11|||
                             |   | |  |||
                             3-DSG |  |||
                                 7-ORN|||
                                   9-DAL|
                                     12-DSN
                                      13-LME
                                       14-KYN
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1t5m SOLUTION STRUCTURE OF THE CALCIUM-DEPENDENT ANTIBIOTIC DAPTOMYCIN
1t5n SOLUTION STRUCTURE OF THE CALCIUM-DEPENDENT ANTIBIOTIC DAPTOMYCIN