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Asym./Biol. Unit (Jmol Viewer)

Title :   X-RAY STRUCTURE OF YAEB FROM HAEMOPHILUS INFLUENZAE. NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESGC) TARGET IR47.

Authors :   J. Benach, I. Lee, F. Forouhar, A. P. Kuzin, J. P. Keller, A. Itkin, R. Xiao, T. Acton, G. T. Montelione, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)

Date :   11 Oct 04 (Deposition) - 19 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Protein Structure Initiative, Psi, Nesg, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Benach, I. Lee, F. Forouhar, A. P. Kuzin, J. P. Keller, A. Itkin, R. Xiao, T. Acton, G. T. Montelione, J. F. Hunt
X-Ray Structure Of Yaeb From Haemophilus Influenzae. Northeast Structural Genomics Research Consortium (Nesgc) Target Ir47.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL UPF0066 PROTEIN HI0510
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	YAEB
	Mutation	:	YES
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727
	Synonym	:	IR47

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 6)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1XQB)

(no "SS Bond" information available for 1XQB)

Asymmetric/Biological Unit

No.	Residues
1	Pro A:40	-	Pro A:41
2	Pro B:40	-	Pro B:41

(no "SAP(SNP)/Variant" information available for 1XQB)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TSAA_2	PS51668	TsaA-like domain profile.	TRMO_HAEIN	6-147	2	A:6-147 B:6-147
2	TSAA_1	PS01318	TsaA-like domain signature.	TRMO_HAEIN	87-98	2	A:87-98 B:87-98

(no "Exon" information available for 1XQB)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:186
 aligned with TRMO_HAEIN | P44740 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 
           TRMO_HAEIN     1 MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQFDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSSFAQEKLPVKLTVEFTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRIYGMSLYEFNVKWRIKAGTVNCVE 231
               SCOP domains d1xqba_ A: Hypothetical protein HI0510                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee....hhhhh..........eeeeee...........hhhhh.eeeeeee.----------------------.hhhhh........eeeeeeeeeeeeee..eeeeeeee.......eeeeeee.hhhhhh.......-------....eeehhhhhhhhhhhh...............-------------....eeee..eeee.---.eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----TSAA_2  PDB: A:6-147 UniProt: 6-147                                                                                                           ------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------TSAA_1      ------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xqb A   1 mNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQm----------------------VGVFASRATHRPNPLGmSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSS-------VKMTVEFTEQAKSAVKKREEKRPHLSRFIRQVLE-------------DRIYGMSLYEFNVKW---AGTVNCVE 231
                            |       10        20        30        40        50        60  |      -         -     |  90       100 |     110       120       130       140       150|      160       170       180       190 |       -     | 210       220   |   230 
                            |                                                            63-MSE                 86             102-MSE                                          151     159                              192           206           220 224       
                            1-MSE

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with TRMO_HAEIN | P44740 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:231
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 
           TRMO_HAEIN     1 MNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQFDQIQQGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSSFAQEKLPVKLTVEFTEQAKSAVKKREEKRPHLSRFIRQVLEQDPRPAYQQGKPSDRIYGMSLYEFNVKWRIKAGTVNCVE 231
               SCOP domains d1xqbb_ B: Hypothetical protein HI0510                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee....hhhhh..........eeeeee...........hhhhh.eeeeeee.----------------------.hhhhh........eeeeeeeeeeeeee..eeeeeeee.......eeeeeee.hhhhhh.......-------....eeehhhhhhhhhhhh...............-------------....eeee..eeee.---.eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----TSAA_2  PDB: B:6-147 UniProt: 6-147                                                                                                           ------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------TSAA_1      ------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xqb B   1 mNDLTLSPIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQm----------------------VGVFASRATHRPNPLGmSKVELRQVECINGNIFLHLGAVDLVDGTPIFDIKPYIAYADSEPNAQSS-------VKMTVEFTEQAKSAVKKREEKRPHLSRFIRQVLE-------------DRIYGMSLYEFNVKW---AGTVNCVE 231
                            |       10        20        30        40        50        60  |      -         -     |  90       100 |     110       120       130       140       150|      160       170       180       190 |       -     | 210       220   |   230 
                            1-MSE                                                        63-MSE                 86             102-MSE                                          151     159                              192           206           220 224

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Multi-domain proteins (alpha and beta) (2421)

Fold: YaeB-like (1)

Superfamily: YaeB-like (1)

Family: YaeB-like (1)

Protein domain: Hypothetical protein HI0510 (1)

Haemophilus influenzae [TaxId: 727] (1)

1a	d1xqba_	A:
1b	d1xqbb_	B:

(no "CATH Domain" information available for 1XQB)

(no "Pfam Domain" information available for 1XQB)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (TRMO_HAEIN | P44740)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0000049	tRNA binding	Interacting selectively and non-covalently with transfer RNA.
	GO:0089715	tRNA m6t6A37 methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing N6-threonylcarbamoyladenosine = S-adenosyl-L-homocysteine + tRNA containing N6-methylthreonylcarbamoyladenosine.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0030488	tRNA methylation	The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
	GO:0008033	tRNA processing	The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

Asymmetric/Biological Unit
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	Sites
(no "Sites" information available for 1xqb)

	Cis Peptide Bonds
		Pro A:40 - Pro A:41	[ RasMol ]
		Pro B:40 - Pro B:41	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (1, 6)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

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