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(-) Description

Title :  STRUCTURE OF A POSSIBLE GLYOXALASE FROM BACILLUS CEREUS
 
Authors :  M. E. Cuff, H. Li, A. Joachimiak, Midwest Center For Structural Gen (Mcsg)
Date :  11 Oct 04  (Deposition) - 23 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Keywords :  Dioxygenase, Glyoxalase/Bleomycin Resistance, Structural Genomics, Midwest Center For Structural Genomics, Mcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, H. Li, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Structure Of A Possible Glyoxalase From Bacillus Cereus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: AAP10513
    Organism Scientific: BACILLUS CEREUS ATCC 14579
    Organism Taxid: 226900
    Strain: ATCC 14579 / DSM 31
    Synonym: HYPOTHETICAL PROTEIN BC3580

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)
Biological Unit 3 (1x): A 
Biological Unit 4 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3P6G-1Ligand/IonHEXAETHYLENE GLYCOL
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3P6G1Ligand/IonHEXAETHYLENE GLYCOL
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3P6G-1Ligand/IonHEXAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:5 , HIS B:62 , GLU B:109 , HOH B:473 , HOH B:554BINDING SITE FOR RESIDUE MG B 401
2AC2SOFTWAREHIS A:62 , GLU A:109 , HOH A:614 , HOH A:635 , HIS B:5BINDING SITE FOR RESIDUE MG A 402
3AC3SOFTWARELYS A:22 , TYR A:23 , LYS A:75 , ARG A:79 , ASP A:83 , HOH A:629 , HOH A:646 , LYS B:22 , TYR B:23 , GLN B:72 , LYS B:75 , ARG B:79 , ASP B:83BINDING SITE FOR RESIDUE P6G A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XQA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XQA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XQA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XQA)

(-) Exons   (0, 0)

(no "Exon" information available for 1XQA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with Q81AI8_BACCR | Q81AI8 from UniProtKB/TrEMBL  Length:112

    Alignment length:113
                             1                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109   
         Q81AI8_BACCR     - -MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRGNAFAVMRDNDGFILTLMKGKEVQYPKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPKHAHAYTFYVEAPGGFTIEVMC 112
               SCOP domains d1xqaa_ A: Hypothetical protein BC3580                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhhhh.eeeeee...eeeee.....eeeeee...........eeee..hhhhhhhhhhhhhhh..........-.eeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xqa A   0 AmGIKHLNLTVADVVAAREFLEKYFGLTCSGTRGNAFAVmRDNDGFILTLmKGKEVQYPKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPKHA-AYTFYVEAPGGFTIEVmC 112
                             |       9        19        29        39        49|       59        69        79        89   | |  99       109 | 
                             |                                    39-MSE     50-MSE                                     93 |             111-MSE
                             1-MSE                                                                                        95                 


Chain B from PDB  Type:PROTEIN  Length:111
 aligned with Q81AI8_BACCR | Q81AI8 from UniProtKB/TrEMBL  Length:112

    Alignment length:112
                                    10        20        30        40        50        60        70        80        90       100       110  
         Q81AI8_BACCR     1 MGIKHLNLTVADVVAAREFLEKYFGLTCSGTRGNAFAVMRDNDGFILTLMKGKEVQYPKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPKHAHAYTFYVEAPGGFTIEVMC 112
               SCOP domains d1xqab_ B: Hypothetical protein BC3580                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Glyoxalase-1xqaB01 B:2-110                                                                                   -- Pfam domains (1)
           Pfam domains (2) -Glyoxalase-1xqaB02 B:2-110                                                                                   -- Pfam domains (2)
         Sec.struct. author ....eeeeee.hhhhhhhhhhhhhh.eeeeee...eeeee.....eeeeee..........eeeee..hhhhhhhhhhhhhhh..........-.eeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1xqa B   1 mGIKHLNLTVADVVAAREFLEKYFGLTCSGTRGNAFAVmRDNDGFILTLmKGKEVQYPKTFHVGFPQESEEQVDKINQRLKEDGFLVEPPKHA-AYTFYVEAPGGFTIEVmC 112
                            |       10        20        30        40        50        60        70        80        90  | |  100       110| 
                            |                                    39-MSE     50-MSE                                     93 |             111-MSE
                            1-MSE                                                                                        95
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XQA)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Glyoxalase (58)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XQA)

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