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(-) Description

Title :  SOLUTION STRUCTURE OF AT3G04780.1, AN ARABIDOPSIS ORTHOLOG OF THE C-TERMINAL DOMAIN OF HUMAN THIOREDOXIN-LIKE PROTEIN
 
Authors :  J. Song, C. T. Robert, M. S. Lee, J. L. Markley, Center For Eukaryotic Structural Genomics (Cesg)
Date :  07 Oct 04  (Deposition) - 12 Oct 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Structural Genomics, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Psi, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Song, R. C. Tyler, R. L. Wrobel, R. O. Frederick, F. C. Vojtek, W. B. Jeon, M. S. Lee, J. L. Markley
Solution Structure Of At3G04780. 1-Des15, An Arabidopsis Thaliana Ortholog Of The C-Terminal Domain Of Human Thioredoxin-Like Protein.
Protein Sci. V. 14 1059 2005
PubMed-ID: 15741346  |  Reference-DOI: 10.1110/PS.041246805
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AT3G04780.1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XOY)

(-) Sites  (0, 0)

(no "Site" information available for 1XOY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XOY)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XOY)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PITHPS51532 PITH domain profile.PITH1_ARATH5-176  1A:5-161

(-) Exons   (0, 0)

(no "Exon" information available for 1XOY)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with PITH1_ARATH | Q9SQZ9 from UniProtKB/Swiss-Prot  Length:176

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
          PITH1_ARATH     1 MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161
               SCOP domains d1xoya_ A: Hypothetical protein AT3g04780/F7O18_27                                                                                                                SCOP domains
               CATH domains 1xoyA00 A:1-161 Hypothetical protein at3g04780.1.                                                                                                                 CATH domains
               Pfam domains --------------PITH-1xoyA01 A:15-161                                                                                                                               Pfam domains
         Sec.struct. author .............ee..........ee........hhhhhh..........ee......eeeeeeeeeee.eeeeeee......eeeeeeee.....hhhhhh.....eee....hhhhh..ee........eeeeeeeeeee.......ee.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----PITH  PDB: A:5-161 UniProt: 5-176                                                                                                                             PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xoy A   1 SSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: GBD (153)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (PITH1_ARATH | Q9SQZ9)
molecular function
    GO:0016671    oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.
    GO:0015035    protein disulfide oxidoreductase activity    Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0034599    cellular response to oxidative stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000103    sulfate assimilation    The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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(-) Related Entries Specified in the PDB File

6341 RELATED ID: GO.11624 RELATED DB: TARGETDB