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(-) Description

Title :  SOLUTION STRUCTURE OF PYROCOCCUS FURIOSUS PROTEIN PF0470: THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PFR14
 
Authors :  G. Liu, R. Xiao, D. Parish, L. Ma, D. Sukumaran, T. Acton, G. T. Montelion T. Szyperski, Northeast Structural Genomics Consortium (Nesg)
Date :  04 Oct 04  (Deposition) - 14 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Gft Nmr, Structural Genomics, Protein Structure Initiative, Psi, Nesg, Pfr14, Alpha And Beta Protein, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Liu, Y. Shen, H. S. Atreya, D. Parish, Y. Shao, D. K. Sukumaran, R. Xiao, A. Yee, A. Lemak, A. Bhattacharya, T. A. Acton, C. H. Arrowsmith, G. T. Montelione, T. Szyperski
Nmr Data Collection And Analysis Protocol For High-Throughput Protein Structure Determination.
Proc. Natl. Acad. Sci. Usa V. 102 10487 2005
PubMed-ID: 16027363  |  Reference-DOI: 10.1073/PNAS.0504338102

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PF0469
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM 3638

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XNE)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with Q8U3J6_PYRFU | Q8U3J6 from UniProtKB/TrEMBL  Length:113

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
         Q8U3J6_PYRFU     1 MKVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLGRDKE 113
               SCOP domains d1xnea_ A: Hypothetical protein PF0470                                                                            SCOP domains
               CATH domains 1xneA00 A:1-113 Protein pf0470                                                                                    CATH domains
               Pfam domains -----ASCH-1xneA01 A:6-109                                                                                    ---- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhh...eee..............eeee...eeeeeeeeee..hhhhhhhhhhhhhhh....hhhhhhhhhh.............eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xne A   1 MKVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLGRDKE 113
                                    10        20        30        40        50        60        70        80        90       100       110
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: PUA (42)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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