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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PROTEIN YTFP FROM ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER111.
 
Authors :  J. M. Aramini, Y. J. Huang, G. V. T. Swapna, R. K. Paranji, R. Xiao, R. Shastry, T. B. Acton, J. R. Cort, M. A. Kennedy, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  20 Sep 04  (Deposition) - 04 Jan 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Er111, Nmr Structure, Autostructure, Northeast Structural Genomics Consortium, Nesg, Protein Structure Initiative, Psi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Aramini, Y. J. Huang, G. V. Swapna, J. R. Cort, P. K. Rajan, R. Xiao, R. Shastry, T. B. Acton, J. Liu, B. Rost, M. A. Kennedy, G. T. Montelione
Solution Nmr Structure Of Escherichia Coli Ytfp Expands The Structural Coverage Of The Upf0131 Protein Domain Family.
Proteins V. 68 789 2007
PubMed-ID: 17523190  |  Reference-DOI: 10.1002/PROT.21450
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL UPF0131 PROTEIN YTFP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: ER111-21
    Expression System Strain: BL21MGK
    Expression System Taxid: 562
    Expression System Vector: PET21
    Expression System Vector Type: PLASMID
    Gene: YTFP
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XHS)

(-) Sites  (0, 0)

(no "Site" information available for 1XHS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XHS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XHS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XHS)

(-) Exons   (0, 0)

(no "Exon" information available for 1XHS)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with YTFP_ECO57 | P0AE50 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YTFP_ECO57     1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
               SCOP domains d1xhsa_ A: Hypothetical protein YtfP                                                                              SCOP domains
               CATH domains 1xhsA00 A:1-113 Hypothetical upf0131 protein ytfp                                                                 CATH domains
               Pfam domains --AIG2-1xhsA01 A:3-94                                                                         ------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhh.eeeeeeee..eeeee....eeeee....eeeeeee.hhhhhhhhhhhhh....eeeeeeee..eeeeeeee.......eee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xhs A   1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain A from PDB  Type:PROTEIN  Length:113
 aligned with YTFP_ECOL6 | P0AE49 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YTFP_ECOL6     1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
               SCOP domains d1xhsa_ A: Hypothetical protein YtfP                                                                              SCOP domains
               CATH domains 1xhsA00 A:1-113 Hypothetical upf0131 protein ytfp                                                                 CATH domains
               Pfam domains --AIG2-1xhsA01 A:3-94                                                                         ------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhh.eeeeeeee..eeeee....eeeee....eeeeeee.hhhhhhhhhhhhh....eeeeeeee..eeeeeeee.......eee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xhs A   1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain A from PDB  Type:PROTEIN  Length:113
 aligned with YTFP_ECOLI | P0AE48 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YTFP_ECOLI     1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
               SCOP domains d1xhsa_ A: Hypothetical protein YtfP                                                                              SCOP domains
               CATH domains 1xhsA00 A:1-113 Hypothetical upf0131 protein ytfp                                                                 CATH domains
               Pfam domains --AIG2-1xhsA01 A:3-94                                                                         ------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhh.eeeeeeee..eeeee....eeeee....eeeeeee.hhhhhhhhhhhhh....eeeeeeee..eeeeeeee.......eee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xhs A   1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain A from PDB  Type:PROTEIN  Length:113
 aligned with YTFP_SHIFL | P0AE51 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YTFP_SHIFL     1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
               SCOP domains d1xhsa_ A: Hypothetical protein YtfP                                                                              SCOP domains
               CATH domains 1xhsA00 A:1-113 Hypothetical upf0131 protein ytfp                                                                 CATH domains
               Pfam domains --AIG2-1xhsA01 A:3-94                                                                         ------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhh.eeeeeeee..eeeee....eeeee....eeeeeee.hhhhhhhhhhhhh....eeeeeeee..eeeeeeee.......eee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1xhs A   1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKLIESGDWLDRDK 113
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: AIG2 (6)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (YTFP_ECO57 | P0AE50)

Chain A   (YTFP_ECOLI | P0AE48)
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A   (YTFP_SHIFL | P0AE51)

Chain A   (YTFP_ECOL6 | P0AE49)

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