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(-) Description

Title :  BACKBONE STRUCTURE OF COCOSIN, AN 11S STORAGE PROTEIN FROM COCOS NUCIFERA
 
Authors :  D. Balasundaresan, M. N. Ponnuswamy
Date :  17 Sep 04  (Deposition) - 29 Nov 05  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Globulin, Storage Protein, Coconut Endosperm, Hexamer (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Balasundaresan, M. N. Ponnuswamy
Crystal Structure Of Cocosin From Cocos Nucifera, A Backbon Model
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COCOSIN
    ChainsA, B
    Organism CommonCOCONUT PALM
    Organism ScientificCOCOS NUCIFERA
    Organism Taxid13894
    TissueENDOSPERM

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 764)

Asymmetric Unit (1, 764)
No.NameCountTypeFull Name
1UNK764Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 1XGF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XGF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XGF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XGF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XGF)

(-) Exons   (0, 0)

(no "Exon" information available for 1XGF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..eeeee....hhhhhhhheeeeeeee..............eeeee...eeeee...................eeeee..eeeee.................eeeeee........................hhhhhh.........hhhhhhhhh..............................................ee..hhhhh.......eee.......hhhhh........eee....ee.........eeee......eeeee........eee.....eeee....eeeee........eee.........hhhhhhhh.hhhhhhhhhh.hhhhhhhhhhh.....ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xgf A   7 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 493
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Chain B from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................ee......hhhhhhhhee...ee...............eeeee........ee.......eee..eee.........eeeee....ee...........eeeeee........................hhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhh..........................hhhhh..eee..hhhhh..........eeehhhhh.hhhhhh.eeee.eee..eee..eee....eeeeeeee..eeee................eeeee.....eeee....eeeeeeee......eee.hhhhhh.hhhhhhhhh..hhhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xgf B   7 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 493
                            ||||||||16||||||||26||||||||36||||||||46||||||||56||||||||66||||||||76||||||||86|||||||111|||||||121|||||||131|||||||141|||||||151|||||||161|||||||171|||||||202|||||||212|||||||222|||||||232|||||||242|||||||321|||||||331|||||||341|||||||351|||||||361|||||||371|||||||381|||||||391|||||||401|||||||411|||||||421|||||||431|||||||441|||||||451|||||||461|||||||471|||||||481|||||||491||
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   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1XGF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XGF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XGF)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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