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(-) Description

Title :  X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G17340
 
Authors :  G. E. Wesenberg, D. W. Smith, G. N. Phillips Jr. , E. Bitto, C. A. Bingman, S. T. M. Allard, Center For Eukaryotic Structural Genomics (Cesg)
Date :  14 Sep 04  (Deposition) - 28 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Protein Structure Initiative, Psi, Cesg, At2G17340, Center For Eukaryotic Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Bitto, C. A. Bingman, S. T. Allard, G. E. Wesenberg, G. N. Phillips
The Structure At 1. 7 A Resolution Of The Protein Product Of The At2G17340 Gene From Arabidopsis Thaliana.
Acta Crystallogr. , Sect. F V. 61 630 2005
PubMed-ID: 16511115  |  Reference-DOI: 10.1107/S1744309105017690
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNKNOWN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP13-GW
    Expression System Strain: ROSETTA, B834-DE3 PLACI+RARE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AT2G17340
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:220 , ASN A:221 , ASP A:256 , HOH A:419 , HOH A:469 , HOH A:486BINDING SITE FOR RESIDUE MG A 400
2AC2SOFTWAREGLU A:325 , HOH A:416 , HOH A:444 , HOH A:447BINDING SITE FOR RESIDUE MG A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XFI)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Met A:15 -Pro A:16
2Gly A:96 -Pro A:97
3Arg A:193 -Pro A:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XFI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XFI)

(-) Exons   (0, 0)

(no "Exon" information available for 1XFI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with Y2734_ARATH | Q949P3 from UniProtKB/Swiss-Prot  Length:367

    Alignment length:360
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365
          Y2734_ARATH     6 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 365
               SCOP domains d1xfia_ A: Hypothetical protein At2g17340                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------DUF89-1xfiA01 A:48-359                                                                                                                                                                                                                                                                                                  ------ Pfam domains
         Sec.struct. author .................................hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh---------------.hhhhhh.........eehhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhh--..ee..ee...eeeee.............hhhhhhhhh...eeeeehhhhhh..........eeeeeee..hhhhhhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xfi A   6 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF---------------MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEILSQLK--NGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 365
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165         -     | 185       195       205       215       225       235       245       255       265    |  275       285       295       305       315       325       335       345       355       365
                                                                                                                                                                                         165             181                                                                                      270  |                                                                                            
                                                                                                                                                                                                                                                                                                     273
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XFI)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF89] (2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XFI)

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  Cis Peptide Bonds
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 Related Entries

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UniProtKB/Swiss-Prot
        Y2734_ARATH | Q949P3: 2q40

(-) Related Entries Specified in the PDB File

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