1XA0 - JenaLib

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Title :   CRYSTAL STRUCTURE OF MCSG TARGET APC35536 FROM BACILLUS STEAROTHERMOPHILUS

Authors :   J. S. Brunzelle, M. Sommerhalter, G. Minasov, L. Shuvalova, F. R. Colla W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)

Date :   24 Aug 04 (Deposition) - 05 Oct 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Protein Structure Initiative, Mcsg, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. S. Brunzelle, M. Sommerhalter, G. Minasov, L. Shuvalova, F. R. Collart, W. F. Anderson, The Midwest Center For Structural Genomics
Crystal Structure Of Mcsg Target Apc35536 From Bacillus Stearothermophilus
To Be Published
PubMed: search

Molecule 1 - PUTATIVE NADPH DEPENDENT OXIDOREDUCTASES
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 17)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	DTY	2	Mod. Amino Acid	D-TYROSINE
3	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:43 , TYR A:44 , GLY A:161 , VAL A:162 , HOH A:335 , HOH A:349	BINDING SITE FOR RESIDUE SO4 A 329
2	AC2	SOFTWARE	TYR B:44 , ALA B:130 , GLY B:160 , GLY B:161 , VAL B:162 , HOH B:348	BINDING SITE FOR RESIDUE SO4 B 329
3	AC3	SOFTWARE	THR A:156 , THR A:159 , THR A:181 , GLY A:182 , ARG A:201 , ARG A:227 , HOH A:351	BINDING SITE FOR RESIDUE SO4 A 330
4	AC4	SOFTWARE	HIS A:38 , TYR A:39 , ARG A:326 , TYR B:39	BINDING SITE FOR RESIDUE CL A 331

(no "SS Bond" information available for 1XA0)

(no "Cis Peptide Bond" information available for 1XA0)

(no "SAP(SNP)/Variant" information available for 1XA0)

(no "PROSITE Motif" information available for 1XA0)

(no "Exon" information available for 1XA0)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d1xa0a1 A:1-118,A:295-328 B. subtilis YhfP homologue                                                                  d1xa0a2 A:119-294 B. subtilis YhfP homologue                                                                                                                           d1xa0a1 A:1-118,A:295-328          SCOP domains
               CATH domains -1xa0A01 A:2-129,A:294-328 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1xa0A02 A:130-293 NAD(P)-binding Rossmann-like Domain                                                                                                      1xa0A01 A:2-129,A:294-328           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee..eeeeeeeeee.hhh....eeeeeeeee.hhhhhhhhhhhhh...........eeeeeeee..........eeeee..............eeeehhhhhee.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eee....hhhhhhhhhhhhhh...eeeee....hhhhhhhh...eeee.......eeeeee.....hhhhhhhheeeeeeeee............hhhhhhh..eeee......hhhhhhhhhhhhhh....hhhhheeeee..hhhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xa0 A   1 mSAFQAFVVNKTETEFTAGVQTISmDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTyPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAmAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSmLAKRGYTVEASTGKAAEHDYLRVLGAKEVLARELDKQRWAAAVDPVGGRTLATVLSRmRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPmDLRLRIWERLAGDLKPDLERIAQEISLAELPQALKRILRGELRGRTVVRLA 328
                            |       10        20    |   30        40        50        60        70        80        90       100       110       120    |  130       140       150       160       170       180       190       200 ||    219       229      |239       249       259       269       279       289       299       309       319         
                            |                      25-MSE                             60-DTY                                                          125-MSE                                     169-MSE                          202|                     236-MSE                                  277-MSE                                               
                            1-MSE                                                                                                                                                                                                   212

Chain B from PDB  Type:PROTEIN  Length:317
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d1xa0b1 B:2-118,B:295-327 B. subtilis YhfP homologue                                                              d1xa0b2 B:119-294 B. subtilis YhfP homologue                                                                                                                              d1xa0b1 B:2-118,B:295-327         SCOP domains
               CATH domains 1xa0B01 B:2-129,B:294-327 Medium-chain alcohol dehydrogenases, catalytic domain                                              1xa0B02 B:130-293 NAD(P)-binding Rossmann-like Domain                                                                                                         1xa0B01 B:2-129,B:294-327          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....eeeeeeeee.hhh....eeeeeeeee.hhhhhhh.................eeeeeeee.......eeeee..............eeee....eee.....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.eee....hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh..eee...........eeeeee.....hhhhhh..eeeeeeeee............hhhhhhhh.eeee......hhhhhhhhhhhhh.....hhhhheeeee..hhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xa0 B   2 SAFQAFVVNKTETEFTAGVQTISmDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTyPFVPGIDLAGVVVSSQHPEGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAmAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSmLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAERIRPLDKQRWAAAVDPVGGRTLATVLSRmRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPmDLRLRIWERLAGDLKPDLERIAQEISLAELPQALKRILRGELRGRTVVRL 327
                                    11        21   |    31        41        51        61        71      ||84        94       104       114       124|      134       144       154       164    |  174       184       194     ||210       220       230     | 240       250       260       270      |280       290       300       310       320       
                                                  25-MSE                             60-DTY            78|                                        125-MSE                                     169-MSE                        200|                          236-MSE                                  277-MSE                                              
                                                                                                        82                                                                                                                    207

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Geobacillus stearothermophilus. Organism_taxid: 1422. (1)

1a	1xa0B02	B:130-293
1b	1xa0A02	A:130-293

Architecture: Alpha-Beta Complex (3881)

Topology: Quinone Oxidoreductase; Chain A, domain 1 (131)

Homologous Superfamily: Medium-chain alcohol dehydrogenases, catalytic domain (131)

Geobacillus stearothermophilus. Organism_taxid: 1422. (1)

2a	1xa0A01	A:2-129,A:294-328
2b	1xa0B01	B:2-129,B:294-327

(no "Pfam Domain" information available for 1XA0)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1XA0)

Asymmetric/Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 17)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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