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(-) Description

Title :  AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C
 
Authors :  S. Alam, V. Grum-Tokars, J. Krucinska, M. L. Kundracik, J. E. Wedekind
Date :  21 Aug 04  (Deposition) - 22 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.17
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Hairpin Ribozyme, All-Rna, Mutation, High Salt, S-Turn, E- Loop, Catalytic Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Alam, V. Grum-Tokars, J. Krucinska, M. L. Kundracik, J. E. Wedekind
Conformational Heterogeneity At Position U37 Of An All-Rna Hairpin Ribozyme With Implications For Metal Binding And The Catalytic Structure Of The S-Turn.
Biochemistry V. 44 14396 2005
PubMed-ID: 16262240  |  Reference-DOI: 10.1021/BI051550I
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*UP*CP*GP*CP*AP*GP*UP*CP*CP*UP*AP*UP*U)-3'
    Chains: A
    Engineered: YES
    Mutation: YES
    Other Details: SOLID PHASE CHEMICAL SYNTHESIS
    Synthetic: YES
 
Molecule 2 - 5'-R(*AP*AP*UP*AP*GP*AP*GP*AP*AP*GP*CP*GP*A)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - 5'- R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3'
    Chains: C
    Engineered: YES
    Synthetic: YES
 
Molecule 4 - 5'- R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C) -3'
    Chains: D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:RNA  Length:13
                                            
                  1x9k A  2 UCGCAGUCCUAUU 14
                                    11   


Chain B from PDB  Type:RNA  Length:13
                                            
                  1x9k B  2 AAUAGAGAAGCGA 14
                                    11   


Chain C from PDB  Type:RNA  Length:17
                                                
                  1x9k C 15 GGCAGAGAAACACACGA 31
                                    24       


Chain D from PDB  Type:RNA  Length:19
                                                  
                  1x9k D 31 UCGUGGUACAUUACCUGCC 49
                                    40
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 Related Entries

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(-) Related Entries Specified in the PDB File

1m5k FOUR-WAY HELICAL JUNCTION HAIRPIN RIBOZYME WITH U1A
1x9c MINIMAL HAIRPIN RIBOZYME (LOW SALT FORM WITH GC RICH STEMS IN A DOMAIN)