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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PROTEIN TM0979 FROM THERMOTOGA MARITIMA. ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET TM0979_1_87; NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VT98.
 
Authors :  J. A. Gaspar, C. Liu, K. A. Vassall, P. B. Stathopulos, G. Meglei, R. Stephen, A. Pineda-Lucena, B. Wu, A. Yee, C. H. Arrowsmith, E. M. Meiering, Northeast Structural Genomics Consortium (Nesg
Date :  20 Aug 04  (Deposition) - 07 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
Keywords :  Structural Genomics, Protein Structure Initiative, Psi, Northeast Structural Genomics Consortium, Nesg, Ocsp, Hypothetical Protein, Beta-Alpha Protein, Dimer, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Gaspar, C. Liu, K. A. Vassall, G. Meglei, R. Stephen, P. B. Stathopulos, A. Pineda-Lucena, B. Wu, A. Yee, C. H. Arrowsmith, E. M. Meiering
A Novel Member Of The Ychn-Like Fold: Solution Structure Of The Hypothetical Protein Tm0979 From Thermotoga Maritima.
Protein Sci. V. 14 216 2005
PubMed-ID: 15608123  |  Reference-DOI: 10.1110/PS.041068605
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM0979
    Chains: A, B
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X9A)

(-) Sites  (0, 0)

(no "Site" information available for 1X9A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X9A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X9A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1X9A)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with Q9X074_THEMA | Q9X074 from UniProtKB/TrEMBL  Length:87

    Alignment length:87
                                    10        20        30        40        50        60        70        80       
         Q9X074_THEMA     1 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELETPAKVYAIKDDFLARGYSEEDSKVPLITYSEFIDLLEGEEKFIG  87
               SCOP domains d1x9aa_ A: Hypothetical protein TM0979                                                  SCOP domains
               CATH domains 1x9aA00 A:1-87  [code=3.40.1260.10, no name defined]                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhh.....eeee.hhhhhhhhh......eeeeehhhhhhh..hhhhh...eehhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1x9a A   1 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELETPAKVYAIKDDFLARGYSEEDSKVPLITYSEFIDLLEGEEKFIG  87
                                    10        20        30        40        50        60        70        80       


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q9X074_THEMA | Q9X074 from UniProtKB/TrEMBL  Length:87

    Alignment length:87
                                    10        20        30        40        50        60        70        80       
         Q9X074_THEMA     1 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELETPAKVYAIKDDFLARGYSEEDSKVPLITYSEFIDLLEGEEKFIG  87
               SCOP domains d1x9ab_ B: Hypothetical protein TM0979                                                  SCOP domains
               CATH domains 1x9aB00 B:201-287  [code=3.40.1260.10, no name defined]                                 CATH domains
           Pfam domains (1) ------------DsrH-1x9aB01 B:213-286                                                    - Pfam domains (1)
           Pfam domains (2) ------------DsrH-1x9aB02 B:213-286                                                    - Pfam domains (2)
         Sec.struct. author ..eeee.......hhhhhhhhh....eeee.hhhhhhhhh......eeeeehhhhhhh..........eehhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 1x9a B 201 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELETPAKVYAIKDDFLARGYSEEDSKVPLITYSEFIDLLEGEEKFIG 287
                                   210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: DsrEFH-like (7)
(-)
Family: DsrH (2)
(-)
Thermotoga maritima (2)
1aDsrH-1x9aB01B:213-286
1bDsrH-1x9aB02B:213-286

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A,B   (Q9X074_THEMA | Q9X074)
biological process
    GO:0002143    tRNA wobble position uridine thiolation    The process in which a uridine residue at position 34 in the anticodon of a tRNA is post-transcriptionally thiolated at the C2 position. This process involves transfer of a sulfur from cysteine to position C2 by several steps.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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UniProtKB/TrEMBL
        Q9X074_THEMA | Q9X074: 1rhx

(-) Related Entries Specified in the PDB File

vt98