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(-) Description

Title :  SOLUTION STRUCTURES OF THE C2H2 TYPE ZINC FINGER DOMAIN OF HUMAN ZINC FINGER PROTEIN 24
 
Authors :  M. Sato, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  17 May 05  (Deposition) - 17 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Znf24, Kox17, Znf191, Zscan3, Zinc Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sato, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The C2H2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER PROTEIN 24
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040712-01
    Expression System Vector Type: PLASMID
    Fragment: C2H2 TYPE ZINC FINGER DOMAIN
    Gene: ZNF24
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: ZINC FINGER PROTEIN 191, ZINC FINGER PROTEIN KOX17, RETINOIC ACID SUPPRESSION PROTEIN A, RSG-A, ZINC FINGER AND SCAN DOMAIN CONTAINING PROTEIN 3

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:17 , CYS A:20 , HIS A:33 , HIS A:37BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:45 , CYS A:48 , HIS A:61 , HIS A:65BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X6E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X6E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

NMR Structure (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_012018G331WZNF24_HUMANPolymorphism3568AS67W
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 3)

NMR Structure (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_FINGER_C2H2_1PS00028 Zinc finger C2H2 type domain signature.ZNF24_HUMAN253-273
281-301
309-329
337-357		  3-
A:17-37
A:45-65
A:70-71

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003990611bENSE00001536260chr18:32924391-3292433458ZNF24_HUMAN-00--
1.2ENST000003990612ENSE00001387215chr18:32920697-32920195503ZNF24_HUMAN1-1401400--
1.3ENST000003990613ENSE00000668338chr18:32919940-32919793148ZNF24_HUMAN141-190500--
1.4aENST000003990614aENSE00001536258chr18:32917734-32917189546ZNF24_HUMAN190-3681791A:1-72 (gaps)93

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with ZNF24_HUMAN | P17028 from UniProtKB/Swiss-Prot  Length:368

    Alignment length:93
                                   266       276       286       296       306       316       326       336       346   
          ZNF24_HUMAN   257 GKHFSQGSALILHQRIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTGEKPYECVQCGKSYSQSSN 349
               SCOP domains ---------------d1x6ea1 A:8-40                   d1x6ea2 A:41-66           ------------------- SCOP domains
               CATH domains -------------------1x6eA01 A:12-39             1x6eA02 A:40-72                                CATH domains
           Pfam domains (1) ----------------------------------------------------------------zf-H2C2_2-------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------zf-H2C2_2-------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------zf-H2C2_2-------------------- Pfam domains (3)
         Sec.struct. author .---.....-----........ee......ee.hhhhhhhhhhhhhh...ee......ee.hhhhhhhhhhhhhh-------------..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------W------------------ SAPs(SNPs)
                    PROSITE ZINC_FINGER_C2H2_-------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C PROSITE
               Transcript 1 Exon 1.4a  PDB: A:1-72 (gaps) UniProt: 190-368 [INCOMPLETE]                                   Transcript 1
                 1x6e A   1 G---SSGSS-----GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS-------------GPSSG  72
                            |   |   |-    |   12        22        32        42        52        62    |    -        69   
                            |   2   6     7                                                          67            68    
                            1
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 2)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

NMR Structure
(-)
Clan: C2H2-zf (71)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)
Chain A   (ZNF24_HUMAN | P17028)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0042552    myelination    The process in which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  1x6e
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  ZNF24_HUMAN | P17028
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZNF24_HUMAN | P17028: 3lhr

(-) Related Entries Specified in the PDB File

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