1X0V - JenaLib

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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HOMO SAPIEN GLYCEROL-3-PHOSPHATE DEHYDROGENASE 1

Authors :   Z. Rao, X. Ou

Date :   30 Mar 05 (Deposition) - 11 Apr 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (1x),B (1x)

Keywords :   Two Independent Domains, Gxgxxg Motif, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Ou, C. Ji, X. Han, X. Zhao, X. Li, Y. Mao, L. L. Wong, M. Bartlam, Z. Rao
Crystal Structures Of Human Glycerol 3-Phosphate Dehydrogenase 1 (Gpd1)
J. Mol. Biol. V. 357 858 2006
PubMed-ID: 16460752 | Reference-DOI: 10.1016/J.JMB.2005.12.074
(for further references see the PDB file header)

Molecule 1 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD+], CYTOPLASMIC
	Chains	:	A, B
	EC Number	:	1.1.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	DE3(BL21)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GPD-C, GPDH-C

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 31)

No.	Name	Count	Type	Full Name
1	MSE	17	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 31)

No.	Name	Count	Type	Full Name
1	MSE	17	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 16)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:20 , HIS A:67 , LYS A:68 , HOH A:1245	BINDING SITE FOR RESIDUE SO4 A 1001
02	AC2	SOFTWARE	LYS B:68 , SO4 B:1010	BINDING SITE FOR RESIDUE SO4 A 1002
03	AC3	SOFTWARE	ASN A:13 , TRP A:14 , ARG A:269 , HOH A:1058 , HOH A:1173	BINDING SITE FOR RESIDUE SO4 A 1003
04	AC4	SOFTWARE	ARG A:271 , HOH A:1073 , HOH A:1222 , HOH A:1290 , HOH A:1327	BINDING SITE FOR RESIDUE SO4 A 1004
05	AC5	SOFTWARE	GLY B:12 , ASN B:13 , TRP B:14 , HOH B:1035 , HOH B:1168 , HOH B:1178 , HOH B:1295	BINDING SITE FOR RESIDUE SO4 B 1005
06	AC6	SOFTWARE	LYS B:204 , THR B:264 , GLY B:268 , ARG B:269 , ASN B:270 , HOH B:1028 , HOH B:1038 , HOH B:1088 , HOH B:1119 , HOH B:1315	BINDING SITE FOR RESIDUE SO4 B 1006
07	AC7	SOFTWARE	LYS A:178 , GLN A:182 , ARG A:187 , HOH A:1049 , HOH A:1115 , HOH A:1314	BINDING SITE FOR RESIDUE SO4 A 1007
08	AC8	SOFTWARE	PRO B:346 , GLU B:347 , HIS B:348 , HOH B:1235	BINDING SITE FOR RESIDUE SO4 B 1008
09	AC9	SOFTWARE	LYS A:204 , ASN A:205 , THR A:264 , GLY A:268 , ARG A:269 , ASN A:270 , GLN A:298 , HOH A:1028 , HOH A:1043 , HOH A:1153 , HOH A:1165	BINDING SITE FOR RESIDUE SO4 A 1009
10	BC1	SOFTWARE	SO4 A:1002 , LYS B:20 , GLY B:66 , HIS B:67	BINDING SITE FOR RESIDUE SO4 B 1010
11	BC2	SOFTWARE	LYS B:240 , SER B:248 , SER B:249 , HOH B:1258	BINDING SITE FOR RESIDUE SO4 B 1011
12	BC3	SOFTWARE	LYS A:240 , SER A:248 , SER A:249 , HOH A:1114	BINDING SITE FOR RESIDUE SO4 A 1012
13	BC4	SOFTWARE	PRO A:346 , GLU A:347 , HIS A:348 , HOH A:1307	BINDING SITE FOR RESIDUE SO4 A 1013
14	BC5	SOFTWARE	LYS B:178 , GLN B:182 , ARG B:187 , HOH B:1146	BINDING SITE FOR RESIDUE SO4 B 1014

(no "SS Bond" information available for 1X0V)

(no "Cis Peptide Bond" information available for 1X0V)

Asymmetric Unit (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029492	I	54	V	GPDA_HUMAN	Polymorphism	2232202	A/B	I	54	V
2	UniProt	VAR_029493	A	113	P	GPDA_HUMAN	Polymorphism	1128867	A/B	A	113	P
3	UniProt	VAR_067425	E	124	K	GPDA_HUMAN	Polymorphism	34783513	A/B	E	124	K
4	UniProt	VAR_049220	V	197	A	GPDA_HUMAN	Polymorphism	2232207	A/B	V	197	A
5	UniProt	VAR_067426	T	223	I	GPDA_HUMAN	Polymorphism	200251017	A/B	T	223	I
6	UniProt	VAR_071967	R	229	P	GPDA_HUMAN	Disease (HTGTI)	199673455	A/B	R	229	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029492	I	54	V	GPDA_HUMAN	Polymorphism	2232202	A/B	I	54	V
2	UniProt	VAR_029493	A	113	P	GPDA_HUMAN	Polymorphism	1128867	A/B	A	113	P
3	UniProt	VAR_067425	E	124	K	GPDA_HUMAN	Polymorphism	34783513	A/B	E	124	K
4	UniProt	VAR_049220	V	197	A	GPDA_HUMAN	Polymorphism	2232207	A/B	V	197	A
5	UniProt	VAR_067426	T	223	I	GPDA_HUMAN	Polymorphism	200251017	A/B	T	223	I
6	UniProt	VAR_071967	R	229	P	GPDA_HUMAN	Disease (HTGTI)	199673455	A/B	R	229	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029492	I	54	V	GPDA_HUMAN	Polymorphism	2232202	A/B	I	54	V
2	UniProt	VAR_029493	A	113	P	GPDA_HUMAN	Polymorphism	1128867	A/B	A	113	P
3	UniProt	VAR_067425	E	124	K	GPDA_HUMAN	Polymorphism	34783513	A/B	E	124	K
4	UniProt	VAR_049220	V	197	A	GPDA_HUMAN	Polymorphism	2232207	A/B	V	197	A
5	UniProt	VAR_067426	T	223	I	GPDA_HUMAN	Polymorphism	200251017	A/B	T	223	I
6	UniProt	VAR_071967	R	229	P	GPDA_HUMAN	Disease (HTGTI)	199673455	A/B	R	229	P

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NAD_G3PDH	PS00957	NAD-dependent glycerol-3-phosphate dehydrogenase signature.	GPDA_HUMAN	201-222	2	A:201-222 B:201-222

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NAD_G3PDH	PS00957	NAD-dependent glycerol-3-phosphate dehydrogenase signature.	GPDA_HUMAN	201-222	2	A:201-222 B:201-222

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NAD_G3PDH	PS00957	NAD-dependent glycerol-3-phosphate dehydrogenase signature.	GPDA_HUMAN	201-222	2	A:201-222 B:201-222

Asymmetric Unit (8, 16)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000301149	1	ENSE00001239163	chr12:50497801-50497874	74	GPDA_HUMAN	1-14	14	2	A:2-14 B:1-14	13 14
1.2	ENST00000301149	2	ENSE00001194139	chr12:50498357-50498534	178	GPDA_HUMAN	14-73	60	2	A:14-73 B:14-73	60 60
1.3	ENST00000301149	3	ENSE00001194132	chr12:50499331-50499471	141	GPDA_HUMAN	74-120	47	2	A:74-120 B:74-120	47 47
1.4	ENST00000301149	4	ENSE00001680723	chr12:50500071-50500209	139	GPDA_HUMAN	121-167	47	2	A:121-167 B:121-167	47 47
1.5	ENST00000301149	5	ENSE00001194124	chr12:50500588-50500700	113	GPDA_HUMAN	167-204	38	2	A:167-204 B:167-204	38 38
1.6	ENST00000301149	6	ENSE00001728210	chr12:50501350-50501583	234	GPDA_HUMAN	205-282	78	2	A:205-282 B:205-282	78 78
1.7	ENST00000301149	7	ENSE00001194116	chr12:50501807-50501913	107	GPDA_HUMAN	283-318	36	2	A:283-318 B:283-318	36 36
1.8	ENST00000301149	8	ENSE00001239159	chr12:50503206-50505091	1886	GPDA_HUMAN	318-349	32	2	A:318-349 B:318-349	32 32

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:348
 aligned with GPDA_HUMAN | P21695 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:348
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341        
           GPDA_HUMAN     2 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 349
               SCOP domains d1x0va1 A:2-193 automated matches                                                                                                                                                               d1x0va2 A:194-349 automated matches                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhh..............eeee.hhhhhhh...eeee..hhhhhhhhhhhhh.......eeee.............hhhhhhhhhhh..eeeee...hhhhhhh...eeeeee..hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------V----------------------------------------------------------P----------K------------------------------------------------------------------------A-------------------------I-----P------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAD_G3PDH             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1     -----------------------------------------------------------Exon 1.3  PDB: A:74-120 UniProt: 74-120        Exon 1.4  PDB: A:121-167 UniProt: 121-167      -------------------------------------Exon 1.6  PDB: A:205-282 UniProt: 205-282                                     Exon 1.7  PDB: A:283-318            ------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.2  PDB: A:14-73 UniProt: 14-73                       ---------------------------------------------------------------------------------------------Exon 1.5  PDB: A:167-204              -----------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: A:318-349         Transcript 1 (2)
                 1x0v A   2 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTmWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPmSVLmGANIASEVADEKFCETTIGCKDPAQGQLLKELmQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLmEmIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFmAVYKVCYEGQPVGEFIHCLQNHPEHm 349
                                    11        21        31      | 41        51        61        71        81        91       101       111       121       131       141  |   |151       161       171       181       191       201       211       221       231 | |   241       251       261       271       281       291       301       311       321 |     331       341       |
                                                               38-MSE                                                                                                   144-MSE                              181-MSE                                             233-MSE                                                                                   323-MSE                   349-MSE
                                                                                                                                                                            148-MSE                                                                                235-MSE

Chain B from PDB  Type:PROTEIN  Length:349
 aligned with GPDA_HUMAN | P21695 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
           GPDA_HUMAN     1 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 349
               SCOP domains d1x0vb1 B:1-193 automated matches                                                                                                                                                                d1x0vb2 B:194-349 automated matches                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----NAD_Gly3P_dh_N-1x0vB03 B:5-174                                                                                                                                            -----------------NAD_Gly3P_dh_C-1x0vB01 B:192-342                                                                                                                       ------- Pfam domains (1)
           Pfam domains (2) ----NAD_Gly3P_dh_N-1x0vB04 B:5-174                                                                                                                                            -----------------NAD_Gly3P_dh_C-1x0vB02 B:192-342                                                                                                                       ------- Pfam domains (2)
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee....ee..eehhhhhhhhh..............eeee.hhhhhhh...eeee..hhhhhhhhhhhhh.......eeee.............hhhhhhhhhhh..eeeee...hhhhhhh...eeeeee..hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------V----------------------------------------------------------P----------K------------------------------------------------------------------------A-------------------------I-----P------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAD_G3PDH             ------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1      -----------------------------------------------------------Exon 1.3  PDB: B:74-120 UniProt: 74-120        Exon 1.4  PDB: B:121-167 UniProt: 121-167      -------------------------------------Exon 1.6  PDB: B:205-282 UniProt: 205-282                                     Exon 1.7  PDB: B:283-318            ------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.2  PDB: B:14-73 UniProt: 14-73                       ---------------------------------------------------------------------------------------------Exon 1.5  PDB: B:167-204              -----------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: B:318-349         Transcript 1 (2)
                 1x0v B   1 mASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTmWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPmSVLmGANIASEVADEKFCETTIGCKDPAQGQLLKELmQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLmEmIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFmAVYKVCYEGQPVGEFIHCLQNHPEHm 349
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140   |   150       160       170       180|      190       200       210       220       230  | |  240       250       260       270       280       290       300       310       320  |    330       340        |
                            |                                   38-MSE                                                                                                   144-MSE                              181-MSE                                             233-MSE                                                                                   323-MSE                   349-MSE
                            1-MSE                                                                                                                                            148-MSE                                                                                235-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 1X0V)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: 6PGD_C (47)

Family: NAD_Gly3P_dh_C (11)

Homo sapiens (Human) (4)

1a	NAD_Gly3P_dh_C-1x0vB01	B:192-342
1b	NAD_Gly3P_dh_C-1x0vB02	B:192-342

Clan: NADP_Rossmann (1239)

Family: NAD_Gly3P_dh_N (11)

Homo sapiens (Human) (4)

2a	NAD_Gly3P_dh_N-1x0vB03	B:5-174
2b	NAD_Gly3P_dh_N-1x0vB04	B:5-174

Asymmetric Unit(hide GO term definitions)

Chain A,B (GPDA_HUMAN | P21695)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+.
	GO:0004368	glycerol-3-phosphate dehydrogenase activity	Catalysis of the reaction: sn-glycerol 3-phosphate + a quinone = glycerone phosphate + a quinol.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0006734	NADH metabolic process	The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
	GO:0006116	NADH oxidation	A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0071320	cellular response to cAMP	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
	GO:0071356	cellular response to tumor necrosis factor	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0046168	glycerol-3-phosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
	GO:0006072	glycerol-3-phosphate metabolic process	The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
	GO:0046486	glycerolipid metabolic process	The chemical reactions and pathways involving glycerolipids, any lipid with a glycerol backbone. Diacylglycerol and phosphatidate are key lipid intermediates of glycerolipid biosynthesis.
	GO:0006127	glycerophosphate shuttle	The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006654	phosphatidic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.
	GO:0045821	positive regulation of glycolytic process	Any process that activates or increases the frequency, rate or extent of glycolysis.
	GO:0019432	triglyceride biosynthetic process	The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0009331	glycerol-3-phosphate dehydrogenase complex	An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1x0v)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1x0v
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GPDA_HUMAN \| P21695
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.1.1.8
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	614480
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
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Access by UniProt ID/Accession number
	GPDA_HUMAN \| P21695
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GPDA_HUMAN \| P21695	:	1wpq 1x0x

1wpq	THE SAME PRTEIN COMPLEXED WITH NAD AND DIHYDROXYACETONE
1x0x	THE SAME PRTEIN COMPLEXED WITH NAD

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 31)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (6, 12)

PROSITE Motifs (1, 2)

Exons (8, 16)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (2, 4)

Gene Ontology (25, 25)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File