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(-) Description

Title :  X-RAY STRUCTURE OF THE PUTATIVE METHYLTRANSFERASE FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT THE RESOLUTION 2.5 A. NORTEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BTR28
 
Authors :  A. P. Kuzin, Y. Chen, F. Forouhar, S. M. Vorobiev, T. Acton, L. -C. Ma, R. X G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)
Date :  21 Feb 05  (Deposition) - 08 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Northeast Structural Genomics Consortium, Btr28, Methyltransferase, Psi, Protein Structure Initiative, Nesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, Y. Chen, F. Forouhar, S. M. Vorobiev, T. Acton, L. -C. Ma, R. Xiao, G. T. Montelione, J. F. Hunt, L. Tong
X-Ray Structure Of The Putative Methyltransferase From Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution 2. 5 A. Norteast Structural Genomics Consortium Target Btr28
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482
    Synonym: METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1WYZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WYZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WYZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1WYZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
 aligned with Q8A031_BACTN | Q8A031 from UniProtKB/TrEMBL  Length:234

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         Q8A031_BACTN     2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK 234
               SCOP domains d1wyza1 A:2-234 Putative methytransferase BT4190                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhh.hhhhhhhh...eeee.hhhhhhhhhhhhh..........ee.....hhhhhhhhhhhhhh...eeee..-------hhhhhhhhhhhhh...eee....hhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh....eeeeee.......eeeeeehhhhh....---...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wyz A   2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASmGVISE-------DPGADVVAIAQRQKLKVIPLVGPSSIILSVmASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKmIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIP---KIPCIFLLYK 234
                                    11        21        31        41        51        61        71        81    |   91       101       111       121       131       141       151       161       171       181       191       201       211       221   |   231   
                                                                                                               86-MSE1      99                           129-MSE                                             181-MSE                                 221 225         


Chain B from PDB  Type:PROTEIN  Length:227
 aligned with Q8A031_BACTN | Q8A031 from UniProtKB/TrEMBL  Length:234

    Alignment length:234
                                                                                                                                                                                                                                                                  234 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  | 
         Q8A031_BACTN     2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK-   -
               SCOP domains d1wyzb_ B: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........hhhhh.hhhhhhhhhh..eeee.hhhhhhhhhhhhh........eeee.....hhhhhhhhh........eeee..-------hhhhhhhhhhhhh...eee....hhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh....eeeee.........eeeee.hhhh..........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wyz B   2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASmGVISE-------DPGADVVAIAQRQKLKVIPLVGPSSIILSVmASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKmIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKL 235
                                    11        21        31        41        51        61        71        81    |   91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
                                                                                                               86-MSE1      99                           129-MSE                                             181-MSE                                                  


Chain C from PDB  Type:PROTEIN  Length:223
 aligned with Q8A031_BACTN | Q8A031 from UniProtKB/TrEMBL  Length:234

    Alignment length:234
                                                                                                                                                                                                                                                                  234 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  | 
         Q8A031_BACTN     2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK-   -
               SCOP domains d1wyzc_ C: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee......hhhhhh.hhhhhhhh...eeee.hhhhhhhhhhhhh........eeee.----hhhhhhhhhhhhhh...eeeee.-------..hhhhhhhhhhh...eee....hhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh....eeeee.........eeeee.hhh...........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wyz C   2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPL----SPEDISGYLKPLAGGASmGVISE-------DPGADVVAIAQRQKLKVIPLVGPSSIILSVmASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKmIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKL 235
                                    11        21        31        41        51        61  |    |71        81    |   91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
                                                                                         64   69               86-MSE1      99                           129-MSE                                             181-MSE                                                  


Chain D from PDB  Type:PROTEIN  Length:227
 aligned with Q8A031_BACTN | Q8A031 from UniProtKB/TrEMBL  Length:234

    Alignment length:234
                                                                                                                                                                                                                                                                  234 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  | 
         Q8A031_BACTN     2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK-   -
               SCOP domains d1wyzd_ D: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----TP_methylase-1wyzD01 D:7-217                                                                                                                                                                                       ------------------ Pfam domains (1)
           Pfam domains (2) -----TP_methylase-1wyzD02 D:7-217                                                                                                                                                                                       ------------------ Pfam domains (2)
           Pfam domains (3) -----TP_methylase-1wyzD03 D:7-217                                                                                                                                                                                       ------------------ Pfam domains (3)
           Pfam domains (4) -----TP_methylase-1wyzD04 D:7-217                                                                                                                                                                                       ------------------ Pfam domains (4)
         Sec.struct. author ...eee........hhhhhh.hhhhhhhhh..eeee.hhhhhhhhhhhhh...hhhhheeee.....hhhhhhhhhhhhhhh..eeee..-------.hhhhhhhhhhhh...eee....hhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhh....eeeee.........eeeeehhhhh..........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wyz D   2 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASmGVISE-------DPGADVVAIAQRQKLKVIPLVGPSSIILSVmASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKmIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKL 235
                                    11        21        31        41        51        61        71        81    |   91       101       111       121       131       141       151       161       171       181       191       201       211       221       231    
                                                                                                               86-MSE1      99                           129-MSE                                             181-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WYZ)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: TP_methylase] (35)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8A031_BACTN | Q8A031)
molecular function
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.

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