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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE FROM STREPTOCOCCUS MUTANS UA159
 
Authors :  A. A. Fedorov, E. V. Fedorov, S. C. Almo, S. K. Burley, New York Sgx Res Center For Structural Genomics (Nysgxrc)
Date :  15 Dec 04  (Deposition) - 28 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Target T1939, Putative Phosphatase, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, S. C. Almo
Crystal Structure Of Putative Phosphatase From Streptococcu Mutans Ua159
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHATASES INVOLVED IN N-ACETYL-GLUCOSAMINE CATABOLISM
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOCOCCUS MUTANS
    Organism Taxid: 210007
    Strain: UA159

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WVI)

(-) Sites  (0, 0)

(no "Site" information available for 1WVI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WVI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Lys A:1181 -Pro A:1182
2Lys B:2181 -Pro B:2182
3Lys C:3181 -Pro C:3182
4Lys D:4181 -Pro D:4182

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WVI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WVI)

(-) Exons   (0, 0)

(no "Exon" information available for 1WVI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with Q8DTD6_STRMU | Q8DTD6 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
        Q8DTD6_STRMU      2 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF  254
               SCOP domains d1wvia_ A: Putative phosphatase SMU.1415c                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------1wviA02 A:1072-1179 4-nitrophenylphosphatase; domain 2                                                      --------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....ee..eehhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh...hhh.eeehhhhhhhhhhhhh...eeeee.hhhhhhhhhhh..ee......eeee......hhhhhhhhhhhhhh..eeee.....eeee..eeeehhhhhhhhhhhhhh...ee....hhhhhhhhhhhhh.hhh.eeeee.....hhhhhhhh..eeeee........hhhhh.....eee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1wvi A 1002 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF 1254
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251   


Chain B from PDB  Type:PROTEIN  Length:253
 aligned with Q8DTD6_STRMU | Q8DTD6 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
        Q8DTD6_STRMU      2 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF  254
               SCOP domains d1wvib_ B: Putative phosphatase SMU.1415c                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------1wviB02 B:2072-2179 4-nitrophenylphosphatase; domain 2                                                      --------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....ee..eehhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh...hhh.eeehhhhhhhhhhhhh...eeeee.hhhhhhhhhhh..ee......eeee......hhhhhhhhhhhhhh..eeee.....eeee..eeeehhhhhhhhhhhhhh...ee....hhhhhhhhhhhhh.hhh.eeeee.....hhhhhhhh..eeeee........hhhhh.....eee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1wvi B 2002 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF 2254
                                  2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111      2121      2131      2141      2151      2161      2171      2181      2191      2201      2211      2221      2231      2241      2251   


Chain C from PDB  Type:PROTEIN  Length:253
 aligned with Q8DTD6_STRMU | Q8DTD6 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
        Q8DTD6_STRMU      2 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF  254
               SCOP domains d1wvic_ C: Putative phosphatase SMU.1415c                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------1wviC02 C:3072-3180 4-nitrophenylphosphatase; domain 2                                                       -------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....ee..eehhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh...hhh.eeehhhhhhhhhhhhh...eeeee.hhhhhhhhhhh..ee......eeee......hhhhhhhhhhhhhh..eeee.....eeee..eeeehhhhhhhhhhhhhh...ee....hhhhhhhhhhhhh.hhh.eeeee.....hhhhhhhh..eeeee........hhhhh.....eee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1wvi C 3002 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF 3254
                                  3011      3021      3031      3041      3051      3061      3071      3081      3091      3101      3111      3121      3131      3141      3151      3161      3171      3181      3191      3201      3211      3221      3231      3241      3251   


Chain D from PDB  Type:PROTEIN  Length:253
 aligned with Q8DTD6_STRMU | Q8DTD6 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
        Q8DTD6_STRMU      2 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF  254
               SCOP domains d1wvid_ D: Putative phosphatase SMU.1415c                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------1wviD02 D:4072-4180 4-nitrophenylphosphatase; domain 2                                                       -------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----Hydrolase_6-1wviD01 D:4006-4107                                                                       ----------------------------------------------------------------------Hydrolase_like-1wviD05 D:4178-4252                                         -- Pfam domains (1)
           Pfam domains (2) ----Hydrolase_6-1wviD02 D:4006-4107                                                                       ----------------------------------------------------------------------Hydrolase_like-1wviD06 D:4178-4252                                         -- Pfam domains (2)
           Pfam domains (3) ----Hydrolase_6-1wviD03 D:4006-4107                                                                       ----------------------------------------------------------------------Hydrolase_like-1wviD07 D:4178-4252                                         -- Pfam domains (3)
           Pfam domains (4) ----Hydrolase_6-1wviD04 D:4006-4107                                                                       ----------------------------------------------------------------------Hydrolase_like-1wviD08 D:4178-4252                                         -- Pfam domains (4)
         Sec.struct. author ...eeeee.....ee..eehhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh...hhh.eeehhhhhhhhhhhhh...eeeee.hhhhhhhhhhh..ee......eeee......hhhhhhhhhhhhhh..eeee.....eeee..eeeehhhhhhhhhhhhhh...ee....hhhhhhhhhhhhh.hhh.eeeee.....hhhhhhhh..eeeee........hhhhh.....eee.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1wvi D 4002 TYKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF 4254
                                  4011      4021      4031      4041      4051      4061      4071      4081      4091      4101      4111      4121      4131      4141      4151      4161      4171      4181      4191      4201      4211      4221      4231      4241      4251
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Lys A:1181 - Pro A:1182   [ RasMol ]  
    Lys B:2181 - Pro B:2182   [ RasMol ]  
    Lys C:3181 - Pro C:3182   [ RasMol ]  
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