1WV3 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HYPOTHETICAL PROTEIN SAV0287 FROM STAPHYLOCOCCUS AUREUS

Authors :   Y. Tanaka, Y. Yasutake, I. Tanaka

Date :   10 Dec 04 (Deposition) - 20 Dec 05 (Release) - 09 Jun 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A

Keywords :   Atpase, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Tanaka, M. Kuroda, Y. Yasutake, M. Yao, K. Tsumoto, N. Watanabe, T. Ohta, I. Tanaka
Crystal Structure Analysis Reveals A Novel Forkhead-Associated Domain Of Esat-6 Secretion System C Protein In Staphylococcus Aureus.
Proteins V. 69 659 2007
PubMed-ID: 17680693 | Reference-DOI: 10.1002/PROT.21302
(for further references see the PDB file header)

Molecule 1 - SIMILAR TO DNA SEGREGATION ATPASE AND RELATED PROTEINS
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET26B
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN
	Gene	:	SAV0287
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50
	Organism Taxid	:	158878
	Strain	:	MU50 / ATCC 700699
	Synonym	:	HYPOTHETICAL PROTEIN SAV0287

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:3 , MSE A:14 , TYR A:141 , HIS A:156 , TRP A:163	BINDING SITE FOR RESIDUE CL A 501

(no "SS Bond" information available for 1WV3)

(no "Cis Peptide Bond" information available for 1WV3)

(no "SAP(SNP)/Variant" information available for 1WV3)

(no "PROSITE Motif" information available for 1WV3)

(no "Exon" information available for 1WV3)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:186
 aligned with ESSC_STAAM | Q932J9 from UniProtKB/Swiss-Prot  Length:1479

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
           ESSC_STAAM     1 MHKLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHTSINKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTMTIGPNAYDDMVIQSLMNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVEGIWLEVQADGLNVLSQNTVASSLIRL 186
               SCOP domains d1wv3a1 A:1-78 Protein EssC                                                   d1wv3a2 A:79-186 Protein EssC                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --FtsK_SpoIIIE_N-1wv3A01 A:3-111                                                                               --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee......eeee......ee.......eeeee.....eee..ee...eeeee....eeeeeeee...eeeee......eeeee......ee.......eeee...hhhhhheeeee......eee..ee....eeeee...eeee..eeeee...eeeee.....ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wv3 A   1 mHKLIIKYNKQLKmLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHTSINKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTmTIGPNAYDDmVIQSLmNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVEGIWLEVQADGLNVLSQNTVASSLIRL 186
                            |       10   |    20        30        40        50        60        70        80        90   |   100   |   110       120       130       140       150       160       170       180      
                            |           14-MSE                                                                          94-MSE   104-MSE |                                                                            
                            1-MSE                                                                                                      110-MSE

Chain A from PDB  Type:PROTEIN  Length:186
 aligned with ESSC_STAAW | Q8NYF3 from UniProtKB/Swiss-Prot  Length:1479

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
           ESSC_STAAW     1 MHKLIIKYNKQLKMLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHTSINKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTMTIGPNAYDDMVIQSLMNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVEGIWLEVQADGLNVLSQNTVASSLIRL 186
               SCOP domains d1wv3a1 A:1-78 Protein EssC                                                   d1wv3a2 A:79-186 Protein EssC                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --FtsK_SpoIIIE_N-1wv3A01 A:3-111                                                                               --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee......eeee......ee.......eeeee.....eee..ee...eeeee....eeeeeeee...eeeee......eeeee......ee.......eeee...hhhhhheeeee......eee..ee....eeeee...eeee..eeeee...eeeee.....ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wv3 A   1 mHKLIIKYNKQLKmLNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHTSINKVLVRKGDLDDITLQLYTEADYASFAYPSIQDTmTIGPNAYDDmVIQSLmNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIGDHIYVEGIWLEVQADGLNVLSQNTVASSLIRL 186
                            |       10   |    20        30        40        50        60        70        80        90   |   100   |   110       120       130       140       150       160       170       180      
                            1-MSE       14-MSE                                                                          94-MSE   104-MSE |                                                                            
                                                                                                                                       110-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: SMAD/FHA domain (62)

Superfamily: SMAD/FHA domain (62)

Family: EssC N-terminal domain-like (1)

Protein domain: Protein EssC (1)

Staphylococcus aureus [TaxId: 1280] (1)

1a	d1wv3a1	A:1-78
1b	d1wv3a2	A:79-186

(no "CATH Domain" information available for 1WV3)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: FtsK_SpoIIIE_N] (1)

Family: FtsK_SpoIIIE_N (1)

Staphylococcus aureus (strain MW2) (1)

FtsK_SpoIIIE_N-1wv3A01

A:3-111

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ESSC_STAAW | Q8NYF3)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A (ESSC_STAAM | Q932J9)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 1wv3)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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