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(-) Description

Title :  CRYSTAL STRUCTURE OF ST0229, FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII
 
Authors :  T. Murayama, Y. Tanaka, T. Sasaki, Y. Yasutake, M. Yao, K. Tsumoto, I. Tanaka, I. Kumagai
Date :  05 Nov 04  (Deposition) - 08 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Function Unknown Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Murayama, Y. Tanaka, T. Sasaki, Y. Yasutake, M. Yao, K. Tsumoto, I. Tanaka, I. Kumagai
Crystal Structure Of St0229, Function Unknown Protein From Sulfolobus Tokodaii
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ST0229
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SULFOLOBUS TOKODAII
    Organism Taxid: 111955

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1WSC)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:74 -B:74
2A:166 -A:222
3A:177 -A:186
4B:177 -B:186

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WSC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WSC)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMMECR1PS51112 AMMECR1 domain profile.Y229_SULTO15-213
 		  2A:15-213
B:15-213
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMMECR1PS51112 AMMECR1 domain profile.Y229_SULTO15-213
 		  1A:15-213
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AMMECR1PS51112 AMMECR1 domain profile.Y229_SULTO15-213
 		  1-
B:15-213

(-) Exons   (0, 0)

(no "Exon" information available for 1WSC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
 aligned with Y229_SULTO | Q976G0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
           Y229_SULTO     3 QEQLVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGILYSGLLLPQVPMEYCWDEETFLAETCIKAGLEPDCWLNNKVKIKKFQGIIFREEKPKSEKILIIKPSEVKCKKEEI 227
               SCOP domains d1wsca1 A:3-227 Hypothetical protein ST0229                                                                                                                                                                                       SCOP domains
               CATH domains 1wscA01 A:3-122,A:199-227 Hypothetical protein ph0010; domain 1                                                         1wscA02 A:123-198 Hypothetical protein ph0010; domain 2                     1wscA01 A:3-122,A:199-227     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhh.eeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhhhhhh.......hhhhhh.eeeeeeee...ee....hhhhhhhhh.....eeeeee...eeeee.hhhhhhh..hhhhhhhhhhhhhh...hhhhh...eeeee.eeeeee.......eeeehhhhh.hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------AMMECR1  PDB: A:15-213 UniProt: 15-213                                                                                                                                                                 -------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wsc A   3 QEQLVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGILYSGLLLPQVPmEYCWDEETFLAETCIKAGLEPDCWLNNKVKIKKFQGIIFREEKPKSEKILIIKPSEVKCKKEEI 227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162|      172       182       192       202       212       222     
                                                                                                                                                                                          163-MSE                                                            


Chain B from PDB  Type:PROTEIN  Length:214
 aligned with Y229_SULTO | Q976G0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:214
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215    
           Y229_SULTO     6 LVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGILYSGLLLPQVPMEYCWDEETFLAETCIKAGLEPDCWLNNKVKIKKFQGIIFREEKPKSEKILIIKPSE 219
               SCOP domains d1wscb_ B: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains 1wscB01 B:6-122,B:199-219 Hypothetical protein ph0010; domain 1                                                      1wscB02 B:123-198 Hypothetical protein ph0010; domain 2                     1wscB01               CATH domains
           Pfam domains (1) --------------AMMECR1-1wscB01 B:20-204                                                                                                                                                                 --------------- Pfam domains (1)
           Pfam domains (2) --------------AMMECR1-1wscB02 B:20-204                                                                                                                                                                 --------------- Pfam domains (2)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhhheeeeeeeeee..eeee............eehhhhhhhhhhhhhhh.......hhhhhh..eeeeeee...ee.......hhhhhh.....eeeeee...eeeee.hhhhhhh..hhhhhhhhhhhhhh...........eeeee.eeeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------AMMECR1  PDB: B:15-213 UniProt: 15-213                                                                                                                                                                 ------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wsc B   6 LVAVNELNENLGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGILYSGLLLPQVPmEYCWDEETFLAETCIKAGLEPDCWLNNKVKIKKFQGIIFREEKPKSEKILIIKPSE 219
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215    
                                                                                                                                                                                       163-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: AMMECR1] (2)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1WSC)

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