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(-) Description

Title :  CRYSTAL STRUCTURE OF PH1788 FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  M. Sugahara, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  08 Oct 04  (Deposition) - 18 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Pyrococcus Horikoshii, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugahara, N. Kunishima
Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PH1789
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WR2)

(-) Sites  (0, 0)

(no "Site" information available for 1WR2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WR2)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Tyr A:57 -Pro A:58
2Val A:156 -Pro A:157
3Asn A:214 -Pro A:215

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WR2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WR2)

(-) Exons   (0, 0)

(no "Exon" information available for 1WR2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with O59452_PYRHO | O59452 from UniProtKB/TrEMBL  Length:238

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
         O59452_PYRHO     1 MKEEAVRVIEEVLKQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVPITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------ATP-grasp_5-1wr2A01 A:11-234                                                                                                                                                                                                    --- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eehhhhhhhhhhh........eee.hhhhhhhhhhhhh..eeeeee.....hhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh......eeeeee.....eeeeeeeeee...eeeeeeee...hhhhhh..eeee...hhhhhhhhhhh..hhhhhhh.--....hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee......eee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wr2 A   1 MKEEAVRVIEEVLKQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVPITEKDARKMIQEIKAYPILAGA--EEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        |- |     190       200       210       220       230       
                                                                                                                                                                                                            179  |                                                       
                                                                                                                                                                                                               182
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WR2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WR2)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: ATP-grasp (83)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O59452_PYRHO | O59452)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
    Asn A:214 - Pro A:215   [ RasMol ]  
    Tyr A:57 - Pro A:58   [ RasMol ]  
    Val A:156 - Pro A:157   [ RasMol ]  
 

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