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(-) Description

Title :  X-RAY STRUCTURE OF A Z-DNA HEXAMER D(CGCGCG)
 
Authors :  T. Chatake, I. Tanaka, H. Umino, S. Arai, N. Niimura
Date :  15 Aug 04  (Deposition) - 26 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Z-Dna, Heavy Water, Spermine, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Chatake, I. Tanaka, H. Umino, S. Arai, N. Niimura
The Hydration Structure Of A Z-Dna Hexameric Duplex Determined By A Neutron Diffraction Technique.
Acta Crystallogr. , Sect. D V. 61 1088 2005
PubMed-ID: 16041074  |  Reference-DOI: 10.1107/S0907444905015581

(-) Compounds

Molecule 1 - Z-DNA HEXAMER
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 58)

Asymmetric/Biological Unit (2, 58)
No.NameCountTypeFull Name
1DOD57Ligand/Ion
2SPM1Ligand/IonSPERMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:2 , DC A:3 , DG A:4 , DOD A:104 , DOD A:106 , DOD A:137 , DOD A:141 , DOD A:155 , DG B:8 , DC B:9 , DG B:10 , DC B:11 , DG B:12BINDING SITE FOR RESIDUE SPM A 13

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                  1woe A  1 CGCGCG  6

Chain B from PDB  Type:DNA  Length:6
                                     
                  1woe B  7 CGCGCG 12

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(-) Related Entries Specified in the PDB File

1v9g THE NEUTRON STRUCTURE OF THE Z-DNA HEXAMER D(CGCGCG) IN SOLUTION.