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Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE CPN10 FROM THERMUS THERMOPHILUS HB8

Authors :   N. Numoto, A. Kita, K. Miki

Date :   09 Aug 04 (Deposition) - 07 Dec 04 (Release) - 01 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G

Keywords :   Co-Chaperonin, Protein Cpn10, Groes, Thermus Thermophilus, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Numoto, A. Kita, K. Miki
Crystal Structure Of The Co-Chaperonin Cpn10 From Thermus Thermophilus Hb8
Proteins V. 58 498 2005
PubMed-ID: 15558581 | Reference-DOI: 10.1002/PROT.20317
(for further references see the PDB file header)

Molecule 1 - 10 KDA CHAPERONIN
	Chains	:	A, B, C, D, E, F, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-11A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-94
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274

		1	2	3	4	5	6	7
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1WNR)

(no "Site" information available for 1WNR)

(no "SS Bond" information available for 1WNR)

(no "Cis Peptide Bond" information available for 1WNR)

(no "SAP(SNP)/Variant" information available for 1WNR)

Asymmetric/Biological Unit (1, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHAPERONINS_CPN10	PS00681	Chaperonins cpn10 signature.	CH10_THET8	9-33	7	A:2-14 B:2-14 C:2-26 D:2-14 E:2-14 F:2-14 G:2-25

(no "Exon" information available for 1WNR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnra_ A: Cha                   peronin-10 (GroES)                                            SCOP domains
               CATH domains 1wnrA00 A:1-94                    10 Kd Chaperonin, Protein Cpn10; Chain O                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.-------------------.eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr A   1 MIKPLGDRVVVKRI-------------------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -         -   |    40        50        60        70        80        90    
                                        14                  34

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnrb_ B: Cha                   peronin-10 (GroES)                                            SCOP domains
               CATH domains 1wnrB00 B:1-94                    10 Kd Chaperonin, Protein Cpn10; Chain O                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.-------------------.eeeeeeee...ee.....ee........eeee.....eeee....eeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr B   1 MIKPLGDRVVVKRI-------------------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -         -   |    40        50        60        70        80        90    
                                        14                  34

Chain C from PDB  Type:PROTEIN  Length:84
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnrc_ C: Cha          peronin-10 (GroES)                                                     SCOP domains
               CATH domains 1wnrC00 C:1-94           10 Kd Chaperonin, Protein Cpn10; Chain O                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.----------..hhhhhh..eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr C   1 MIKPLGDRVVVKRI----------VLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -    |   30        40        50        60        70        80        90    
                                        14         25

Chain D from PDB  Type:PROTEIN  Length:75
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnrd_ D: Cha                   peronin-10 (GroES)                                            SCOP domains
               CATH domains 1wnrD00 D:1-94                    10 Kd Chaperonin, Protein Cpn10; Chain O                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.-------------------.eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr D   1 MIKPLGDRVVVKRI-------------------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -         -   |    40        50        60        70        80        90    
                                        14                  34

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnre_ E: Cha                   peronin-10 (GroES)                                            SCOP domains
               CATH domains 1wnrE00 E:1-94                    10 Kd Chaperonin, Protein Cpn10; Chain O                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.-------------------.eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr E   1 MIKPLGDRVVVKRI-------------------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -         -   |    40        50        60        70        80        90    
                                        14                  34

Chain F from PDB  Type:PROTEIN  Length:75
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnrf_ F: Cha                   peronin-10 (GroES)                                            SCOP domains
               CATH domains 1wnrF00 F:1-94                    10 Kd Chaperonin, Protein Cpn10; Chain O                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee.-------------------.eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr F   1 MIKPLGDRVVVKRI-------------------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10   |     -         -   |    40        50        60        70        80        90    
                                        14                  34

Chain G from PDB  Type:PROTEIN  Length:86
 aligned with CH10_THET8 | P61493 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:94
                                    17        27        37        47        57        67        77        87        97    
           CH10_THET8     8 VIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101
               SCOP domains d1wnrg_ G: Chaperonin-10         (GroES)                                                       SCOP domains
               CATH domains 1wnrG00 G:1-94 10 Kd Chap        eronin, Protein Cpn10; Chain O                                CATH domains
           Pfam domains (1) -Cpn10-1wnrG01 G:2-93                                                                        - Pfam domains (1)
           Pfam domains (2) -Cpn10-1wnrG02 G:2-93                                                                        - Pfam domains (2)
           Pfam domains (3) -Cpn10-1wnrG03 G:2-93                                                                        - Pfam domains (3)
           Pfam domains (4) -Cpn10-1wnrG04 G:2-93                                                                        - Pfam domains (4)
           Pfam domains (5) -Cpn10-1wnrG05 G:2-93                                                                        - Pfam domains (5)
           Pfam domains (6) -Cpn10-1wnrG06 G:2-93                                                                        - Pfam domains (6)
           Pfam domains (7) -Cpn10-1wnrG07 G:2-93                                                                        - Pfam domains (7)
         Sec.struct. author .eee...eeeeeee...........--------.eeeeeeee...ee.....ee........eeee.....eeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHAPERONINS_CPN10        -------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1wnr G   1 MIKPLGDRVVVKRIEEEPKTKGGIV--------PQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ  94
                                    10        20    |    -   |    40        50        60        70        80        90    
                                                   25       34

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: GroES-like (132)

Superfamily: GroES-like (130)

Family: GroES (15)

Protein domain: Chaperonin-10 (GroES) (13)

Thermus thermophilus [TaxId: 274] (3)

1a	d1wnra_	A:
1b	d1wnrb_	B:
1c	d1wnrc_	C:
1d	d1wnrd_	D:
1e	d1wnre_	E:
1f	d1wnrf_	F:
1g	d1wnrg_	G:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: 10 Kd Chaperonin, Protein Cpn10; Chain O (11)

Homologous Superfamily: 10 Kd Chaperonin, Protein Cpn10; Chain O (11)

Thermus thermophilus. Organism_taxid: 274. (1)

1a	1wnrG00	G:1-94
1b	1wnrC00	C:1-94
1c	1wnrA00	A:1-94
1d	1wnrB00	B:1-94
1e	1wnrD00	D:1-94
1f	1wnrE00	E:1-94
1g	1wnrF00	F:1-94

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GroES (70)

Family: Cpn10 (8)

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (1)

1a	Cpn10-1wnrG01	G:2-93
1b	Cpn10-1wnrG02	G:2-93
1c	Cpn10-1wnrG03	G:2-93
1d	Cpn10-1wnrG04	G:2-93
1e	Cpn10-1wnrG05	G:2-93
1f	Cpn10-1wnrG06	G:2-93
1g	Cpn10-1wnrG07	G:2-93

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G (CH10_THET8 | P61493)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
biological process
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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