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(-) Description

Title :  SOLUTION STRUCTURE OF LECTIN C-TYPE DOMAIN DERIVED FROM A HYPOTHETICAL PROTEIN FROM C. ELEGANS
 
Authors :  N. Kobayashi, S. Koshiba, M. Inoue, N. Tochio, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  29 May 04  (Deposition) - 29 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Lectin C-Type Domain, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kobayashi, S. Koshiba, M. Inoue, N. Tochio, T. Kigawa, S. Yokoyama
Solution Structure Of Lectin C-Type Domain Derived From A Hypothetical Protein From C. Elegans
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YK1067A12
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030929-39
    Expression System Vector Type: PLASMID
    Fragment: LECTIN C-TYPE HOMOLOGUE DOMAIN
    Gene: NIG KOHARA SUGANO CLONE YK1067A12
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: WNT INHIBITORY FAMILY MEMBER

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WK1)

(-) Sites  (0, 0)

(no "Site" information available for 1WK1)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:27 -A:127
2A:100 -A:119

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Glu A:91 -Pro A:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WK1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WK1)

(-) Exons   (0, 0)

(no "Exon" information available for 1WK1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Q19853_CAEEL | Q19853 from UniProtKB/TrEMBL  Length:2229

    Alignment length:182
                                  1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325      1335      1345      1355      1365  
        Q19853_CAEEL   1186 ESFGQYCVKFLTVNDDILSMPQARNFCASAGGYLADDLGDDKNNFYSSIAANTQFWIGLFKNSDGQFYWDRGQGINPDLLNQPITYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPRPFICQKHRYDSDHKPNTIGDADLPAGDWYVKIKTNPTNSNPPYCSLSVRVQSSLQIVSG 1367
               SCOP domains d1wk1a_ A: Hypothetical protein F28B4.3                                                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------Lectin_C-1wk1A01 A:18-129                                                                                       ----------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhh.ee....hhhhhhhhhhhh...eeeeeeee.....eee........ee....................eeeee....hhhh.eeee.........ee....................--------------------------------.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1wk1 A    1 GSSGSSGVKFLTVNDDILSMPQARNFCASAGGYLADDLGDDKNNFYSSIAANTQFWIGLFKNSDGQFYWDRGQGINPDLLNQPITYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPRPFICQKHRYDSDHKPNTIGDASGPS--------------------------------SG  150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       | -         -         -         -| 
                                                                                                                                                                             148                              149
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WK1)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: C_Lectin (98)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  Cis Peptide Bonds
    Glu A:91 - Pro A:92   [ RasMol ]  
 

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  1wk1
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 Related Entries

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